LOCUS       XM_039080098            4161 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC120093558
            (LOC120093558), mRNA.
ACCESSION   XM_039080098
VERSION     XM_039080098.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4161
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4161
                     /gene="LOC120093558"
                     /note="uncharacterized LOC120093558; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 2 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:120093558"
                     /db_xref="RGD:41265557"
     CDS             136..4050
                     /gene="LOC120093558"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:1681..1683,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: uncharacterized protein
                     LOC120093558"
                     /protein_id="XP_038936026.1"
                     /db_xref="GeneID:120093558"
                     /db_xref="RGD:41265557"
                     /translation="MGQKVTTPLTLTLDHWTEVRTRAHNFSVDVKKGPWQTFCSSEWP
                     TFKVGWPPEGAFNLSLVLAVKRIVFQEVGGHPDQIPYIIVWQDLVQDPPPWVKPWITG
                     SGVTVAVAAAKPKQTQPLADPSEPPKIYPEIEDPLWTEPQPPPYPLPRPSAPPAPAPA
                     ERDGVGGPAAGTRSRRGRSPEGDFTVALPLRAYVGGPPPGPDELVPLQYWPFSSADLY
                     NWKTNHPSFSENPSGLTGLLESLMFSHQPTWDDCQQLLQALFTTEEKERILLEARKNV
                     PGPDGTPTNLPNLIDETFPLTRPAWDFNTAEGRERLTVYRRTLVAGLKGAARRPTNLA
                     KVREVLQGPAEPPSVFLERLMEAYRRYTPFDPSSEGQQAAVAMAFIGQSASDIKRKLQ
                     RLEGLQDYTLRDLVKEAEKVYHKRETEEEKQEREKKEAEERENRRDRRQERNLTKILA
                     AVVGDRRIEKGQSGYLGNGARRPPGGKRLQLENDQCAYCKERGHWARNCPKKKQRGPK
                     VLAFEENXGSRGSTPLPEPRVTLSVEGTPVDFLVDTGAEHSVLTKPLGQLGQKKTMVM
                     GATGSKLYPWTTKRVLDVGKSQVTHSFLVIPECPMPLLGRDLLTKLKAQVQFTSKGPK
                     VTWEEAPVACLVLSLEEEYRLHEQNPKHLLAPEWLSAFSEVWAEQAGMGLAKQVPPVV
                     VELKADASPVSVKQYPMSREAKEGIRPHIQRLLQLEILVPCQSPWNTPLLPVRKPGTN
                     DYRPVQDLREVNKRVQDIHPTVPNPYNLLSSLPPERTWYTVLDLKDAFFCLRLHPNSQ
                     PLFAFEWRDPEGGHTGQLTWTRLPQGFKNSPTLFDEALHRDLAPFRAQNPQISLLQYV
                     DDLLLAASTQELCREGTKKLLNELGELGYRVSAKKAQLCRTEVTYLGYTLREGKRWLT
                     EARKKTVMQIPTPTTPRQVREFLGTAGFCRLWIPGFATLAAPLYPLTKEKVPFTWTEE
                     HQRAFEDIKAALLAAPALALPDLTKPFTLYVDERAGVARGVLTQALGPWKRPVAYLSK
                     RLDPVASGWPSCLKAIAAVALLVKDADKLTLGQHVTVIAPHALESIVRQPLDRWMTNA
                     RMTHYQSLLLNERVTFAPPAILNPATLLPEIHNSTPIHQCADILAEETGTRKDLTDRP
                     WPGWVEAFPTKSETAQVVAKKILEEILPRFGVPKALEVIRTQIWDQIKEAYAPGTSEV
                     PHRFQVGDSVLVRRHRAGTLEPRWKGPYLVLLTTPTAVKVDGIAAWIHASHVKKTPSQ
                     NEDNNWMVATTDNPLKLRLCRRSEEPRCRNMARKHRSCESSS"
ORIGIN      
        1 cggtttgtta ggcaaggtct gcaacctgcc gatcagtttc agtgcctctg gtcgacacga
       61 agtcgacgtc ggttttgttt tcttttttct cttttgtttg tgctcgtgtg tgtggtgtgt
      121 gttgtcgagc tcgacatggg acagaaagta acgactcctt tgactttgac tctggatcac
      181 tggactgaag taaggactag agctcacaat ttttcagtag acgttaagaa gggaccctgg
      241 cagacttttt gttcatccga atggccaacc tttaaggtag gatggccacc agagggagcc
      301 tttaacctgt ctcttgttct cgctgttaag cgcattgtct ttcaggaagt aggaggacat
      361 cccgaccaga tcccctatat catcgtctgg caggacctag tccaggatcc cccaccttgg
      421 gttaagccct ggatcacggg gtctggagtg acagtggcgg ttgcggcagc taaacctaag
      481 cagacccaac cgttggcaga cccttcggaa cctccaaaga tctaccctga gatcgaggac
      541 cctttgtgga cggagccaca gccccctcct tatcctctgc cgcgaccatc tgcacccccg
      601 gccccggcac cggccgagag ggacggggtg ggggggcctg cggcggggac acggagccgg
      661 agaggccgca gcccagaagg ggatttcact gttgccctgc ccctccgtgc ctatgttggt
      721 ggccccccgc caggccccga tgaacttgtc cctttgcagt actggccttt ctcttcagct
      781 gatctataca actggaaaac taatcaccct tctttttcag aaaatccctc gggcttgact
      841 gggcttcttg agtcccttat gttttcccat cagcccactt gggatgattg ccagcaactc
      901 ctgcaggccc tcttcaccac agaggagaag gagaggatcc tgttggaagc cagaaagaat
      961 gtccccggac cagatgggac ccccactaat ctccccaatc ttatagatga aaccttcccc
     1021 ttgacccgcc cagcctggga cttcaacact gcggaaggta gggagcgtct cacagtatac
     1081 cgccggactc tagtggcggg gctcaaaggg gccgctcggc gacccactaa tttggctaag
     1141 gtaagagaag ttcttcaggg accagcagag ccgccctctg ttttcttaga gcgactgatg
     1201 gaagcctata ggagatatac accgtttgac ccctcctcgg agggacagca agcggctgta
     1261 gccatggctt tcattgggca gtctgcctcg gacattaaaa gaaagctgca gaggctagag
     1321 gggctccagg actacacttt gcgagatcta gtaaaagaag cagagaaggt gtatcataag
     1381 agggaaacag aggaagagaa acaagagaga gaaaagaaag aggcagagga gagagagaac
     1441 cggcgtgatc gccggcagga gaggaactta actaagattt tggccgcagt agtaggtgac
     1501 agaaggatag agaagggaca gtcagggtac ctgggcaacg gagcaagaag acctccggga
     1561 ggaaaaagac tgcagctcga aaatgatcaa tgtgcatact gcaaagaaag aggacattgg
     1621 gccagaaact gtcctaaaaa gaaacaaaga ggacccaagg tactggcctt tgaagagaac
     1681 taggggagtc ggggctcgac tcccctcccc gagcctaggg taactctttc tgtggagggg
     1741 actcctgttg atttcttggt agacacagga gcagaacatt cagttttgac caagccactg
     1801 ggacaattgg ggcaaaagaa gactatggtg atgggagcca ctggtagtaa actttacccc
     1861 tggaccacta aacgagtttt agatgtagga aaaagccaag tgactcattc ttttcttgtg
     1921 attcctgaat gccccatgcc cctgttggga agagatttat taaccaaact taaggctcaa
     1981 gtacagttca cctccaaagg gccaaaagta acctgggagg aggccccagt tgcatgtttg
     2041 gttttaagtt tagaagaaga ataccgcctc catgagcaga atcccaaaca tttactagcc
     2101 cccgagtggc tgtctgcttt ttccgaagtc tgggcggagc aggcagggat ggggttagcc
     2161 aagcaagtac cgccagtagt agtagaatta aaagctgatg cctccccagt ctcggtcaaa
     2221 caatacccta tgagtaggga agctaaagaa ggcatccggc cacatattca gagactgtta
     2281 caactagaga ttctagtgcc ttgccaatct ccttggaaca ctcctctcct gcctgtacgc
     2341 aagcctggga ctaatgatta tcgaccagta caggatttaa gagaagttaa caaaagggtg
     2401 caggacatcc accctacggt tccaaatcct tacaatttac taagttccct accaccagag
     2461 cggacttggt acactgtctt agacttaaag gatgcctttt tctgccttcg gttgcatccc
     2521 aacagccagc cactatttgc ttttgagtgg agagatccag aaggaggaca cactggccag
     2581 ctgacctgga cacggctgcc ccaagggttc aaaaattctc ctactctctt tgatgaggcg
     2641 ctccatcgag accttgcgcc tttcagggcc caaaaccccc agatttctct cttgcagtac
     2701 gtagacgacc tactgcttgc tgcttcaacc caagaactgt gtcgtgaggg gaccaaaaag
     2761 ctcctaaatg aattgggtga gttggggtac cgggtgtctg ctaaaaaagc tcagctgtgt
     2821 cgcactgagg tgacctacct aggatacact ctccgagaag gaaagcggtg gctcaccgaa
     2881 gctcgaaaga aaactgtgat gcagatcccg acccccacca ctccgcgaca agtacgtgag
     2941 tttctgggga cggcgggctt ttgtagactc tggataccgg ggttcgcaac actggcagcc
     3001 cctttgtacc ctcttacaaa agaaaaggtc ccattcacct ggaccgagga gcaccaaaga
     3061 gcctttgagg acataaaagc tgcattactg gcagcccctg ctctggcctt gccagatttg
     3121 actaagcctt tcaccttata tgttgatgaa cgggctggag tagcccgcgg ggtcttaact
     3181 caggctctag ggccctggaa acgcccggta gcctacttgt caaaaaggtt ggacccggtc
     3241 gccagcggat ggccctcctg cctaaaagcc attgctgccg tggccttact tgttaaagat
     3301 gctgacaagc ttaccctagg tcagcatgtg actgtcattg ctccccatgc tctggagagt
     3361 atcgtgcggc agccactgga ccggtggatg actaacgccc ggatgaccca ctatcagagc
     3421 ctgttactga atgaacgagt gactttcgcc ccccctgcca ttcttaatcc tgctactctt
     3481 ctccctgaga tacataactc taccccaata catcaatgtg ccgacatctt ggcggaagaa
     3541 accggaacaa gaaaggacct gactgatcga ccatggccag gatgggtgga ggctttcccc
     3601 acaaaatccg aaactgctca ggtggtggcc aagaagattc ttgaagaaat cttaccccgg
     3661 tttggggtac ccaaggctct ggaagtcatc agaacacaga tctgggacca gataaaagaa
     3721 gcctacgcac cgggaacttc agaggtgccc cacaggttcc aggttggaga ttcggtctta
     3781 gtcagacgac atcgagctgg caccttggag ccccggtgga aaggaccata tctggtgttg
     3841 ctgaccaccc ccacggcagt aaaggtggat gggatcgctg cttggataca cgcttcccac
     3901 gtcaagaaga cacccagcca aaatgaagac aacaactgga tggtggcaac tactgataat
     3961 cctcttaagc ttcgcctgtg ccgcagaagt gaagagccaa gatgcaggaa tatggccagg
     4021 aaacatagga gctgcgaatc ctccagctag gaaacctgcg cctccgaaac ccacgcctcc
     4081 gaaaccaacg ccagcgaaac cgggaatcat ccagactgct gccgccgcaa aagccgccgc
     4141 tactactgct gtcgctgcta c
//
