LOCUS       XM_039080001            1162 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus myosin light chain 6B (LOC120093525),
            transcript variant X1, mRNA.
ACCESSION   XM_039080001
VERSION     XM_039080001.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080001.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1162
                     /gene="LOC120093525"
                     /note="myosin light chain 6B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     ESTs, 7 long SRA reads, 42 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 208 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:120093525"
                     /db_xref="RGD:41207417"
     CDS             248..910
                     /gene="LOC120093525"
                     /codon_start=1
                     /product="myosin light chain 6B isoform X1"
                     /protein_id="XP_038935929.1"
                     /db_xref="GeneID:120093525"
                     /db_xref="RGD:41207417"
                     /translation="MGLTLLPRNPPPIIPLGVLPKPRAGNGTKVAGLPASSLWAPPQK
                     WLPVGCAREGLNKPCHLLTCPFCPLQIEFNKDQLEEFREAFELFDRVGDGKILYSQCG
                     DLMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFETFLPMLQAVAKHRDQGTYEDYLE
                     GLRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLAGHEDSNGCINYEAFLKHIL
                     SL"
ORIGIN      
        1 tgtgggaagg gtagggaatg aatgaaccgc tagaatgagg ttggggctcc caggccaggc
       61 cagtttccag gggagagagg tgctgtctgc tcctggctca gctgttgaac cccaggaggg
      121 gagactgaag aggacagact tgttagacaa tcacagctgg gggcaggggt aaatttagcc
      181 tttgttcagc ccccagttat gtgagggatg caggactggg gtagcgggag ggaagggaac
      241 aggtggtatg ggattaaccc tgctcccaag aaaccctccc cctataattc ctcttggggt
      301 gctcccaaag cccagggctg ggaatgggac taaagtggcc gggctcccag cctcatccct
      361 ttgggcccct ccccagaagt ggctgccagt tggttgtgct agagagggac tgaataagcc
      421 ctgtcatctc ctcacctgcc ctttttgtcc cctacagatc gagtttaaca aggaccagct
      481 ggaggagttc agagaggcct ttgagctgtt tgaccgagtg ggtgatggca agatcctgta
      541 cagccagtgt ggggacctga tgcgggccct gggccagaac cctaccaacg ccgaggtgct
      601 caaggtcctg gggaacccca agagtgatga gctgaagtcc cggcgtgtag actttgagac
      661 gttcctgcct atgctgcagg cagtggccaa gcaccgggac caaggcacat atgaggacta
      721 cctagagggg ctgcgtgtgt ttgacaaaga gggcaacggc aaagtcatgg gagcggagct
      781 cagacacgtt cttaccactc tcggagagaa gatgactgag gaagaggtag agactgtttt
      841 ggcaggccac gaggacagca acggctgcat caactatgag gccttcctga agcacatcct
      901 aagcctctga gctccgcagc ccctagtgcc ctctagagag gcaacgatcc cggtcaacca
      961 gacaagcgca ggcagtgcgt ttccccatcc gactgtagcg cagccgccag cgctggacaa
     1021 ctttctttct accccaccca actccacccc accccacgta gaacctgcgg gatcggaaac
     1081 ttgccccacc tcctgtgcgg ccagtagtgc gttcctgcca ctagggggca cttacggttt
     1141 tgaaataaaa acatggttcc tg
//
