LOCUS       XM_039079998            6367 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus partner of Y14 and mago-like
            (LOC120093523), mRNA.
ACCESSION   XM_039079998
VERSION     XM_039079998.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts          :: corrected 1 indel
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5225              JACYVU010000171.1  318237-323461
            5226-5227           "NN"               1-2
            5228-6367           JACYVU010000171.1  323462-324601
FEATURES             Location/Qualifiers
     source          1..6367
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6367
                     /gene="LOC120093523"
                     /note="partner of Y14 and mago-like; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 11
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:120093523"
                     /db_xref="RGD:41128918"
     CDS             4695..5345
                     /gene="LOC120093523"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     substituted 1 base at 1 genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:5244..5246,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: partner of Y14 and
                     mago-like"
                     /protein_id="XP_038935926.1"
                     /db_xref="GeneID:120093523"
                     /db_xref="RGD:41128918"
                     /translation="MVTPYVTDETGGNYIASTQRPDGTRHKQLRVKEGYVLQESQPMK
                     NKYVKFFKSKPELPPGQSPDATTQVTPSRPDSGEAGLSKTAKRNLKQKEKRRQQQEKD
                     AEALNRTLFFFFLFFGAGDRTQNRTLDKVSLRDSAQTPSAHHGPQATSLAAFHAPDSV
                     GTTEKAKKIKNLRKKLIXVEELQXHLQTGQFSREQLKKLTWHKVLEEELEDLELGL"
ORIGIN      
        1 ggctgggggg acatgtcttc caagttagag accaagaaag caggcaggtt caatatggaa
       61 gcttgcaaaa tcagatgcat tggtgtgtgt aggggggtgg gggtgggggt gtcttcagag
      121 agagtgggaa tgctcccaat attatggcca acagattagg aatcttgtca gtagttataa
      181 ggggtgatgt agaggggtca ggatgataaa aattacagtt tttgagttag aacttgtgaa
      241 gatgtcagac ttagtgaagg tgaatttttg tcaggatttc tgttgctatg ataaacacaa
      301 ggaccaaagc taggtggaag ggagaggttt atttcatttt aaagcttgtc cttcatcatc
      361 catggaagac ggacagagca gtaactcaag acaggaacct ggaggcagga acagaaacag
      421 aggctgggga gaaaaagaaa gcttattggc ttcttgctca tggcttgctt ccttatacta
      481 cacaataacc cctatctagg tggcctcacc cacggtaagc tgggctctcc tgcattagtc
      541 cttaatcaag aaaattcctc cacagacttc tgtataggcc cgtttaaggg gagaattttt
      601 caagagaagt tccttctttc ctgttgatcc tggtttttgc caaggtgaac aaaaagaaaa
      661 aataaatcta accaggacaa tctgtaagca gctgcatcaa gggaggggct cccttgatca
      721 tcgaagggat agttatctct tgtacccttt taaagtcttt agatgactta tgtttcaagg
      781 ttatagtttt tgaagtttgt tttctgtcca tgtgattgac aagcccatct gaattaattt
      841 tatgggagga gccaagggta tgtatctata ttataggcct tgaataattc agattgtcat
      901 gtttctactc agagagaaat atataattca tatcttattc ttttgaccaa aaatcatgta
      961 aggggctgga gcgatagctt agtggttaag aggaccagct gctcatccac agcacccaag
     1021 ttcaagtctc agcacccact tcatgactca taaccttttg caggatataa aaacacttaa
     1081 atgaaatgta aaaaacaatg atattgattc tggtgacaca cataccttaa tcccagcatt
     1141 tggaaggcag aagcccagag atctctgtga gttctaggtc agcctagtct acacagtgag
     1201 ttcttggata gccagagatg cacactaaat tgttccaaat atatgccttt aagaagaaat
     1261 gatattgaag ctatagcaaa aaaaagtgtc caaattctcc aacaaggata agatgggaca
     1321 gatgcactgt tgaattatat ctgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     1381 gtgtgtgtga tgtacttatt attgagagtc catttatacc ttcgggagag tgagctcatg
     1441 tgtgtgcatg tgtgtagagc agcattttgc aatttgtgga ttgcagcccc tttgtaatgt
     1501 catagttagg ggtcaccaca acacaaggac tccattaaag ggctacagct ttaggaaggg
     1561 tgagaagcac tgatatacag gctagacatc aatattgaat gtctttcttt tattgttaag
     1621 actctattga atagccagaa gaatcctgat caaaaccaca aatgctccct gtaccacatt
     1681 acctaatttc aaaattagac agagtcggga taacaaaaga caggattttg tagaaacaca
     1741 tacattatgt gtcaatggaa tagaagagag gactgagaaa taagccatgt agtcacagcc
     1801 atctgattcc tacttaataa atgtgtgttg gagaaaaggt attcttaaac aggtgatgtc
     1861 aggcaaattg agtagctaca cattgaagag taacactaga tccccgtccc tcctgctcta
     1921 tgaaaatcaa ctcaaaatgg atcaaagact gtaacttaag cccccaaagt attcttgaga
     1981 ggatatcttt gctcaatcgt tcatctaacc cagaataaat ctacatccta taaagaagta
     2041 aagtagggaa ggacagtgtg gcacattcta atcctaactt gagtcaccat aaacaggtaa
     2101 aactctgtga ggtcaggcca tcctccttta catagcttgt tttagaccat ctagggcttt
     2161 acagtaagat cttatctaaa aacaaaacta aaataaaaca ttgatagcta ataagcaata
     2221 taattagtag atgagcaaat gatctgaata gaaatttctg tctgtctgta agtctgtcag
     2281 tttctgtctc tctgtgtctt tgtgactctg tgtctcatgc gcgaacatgt gtgtgtttct
     2341 gtgtgtgtgt gtgtgtgcgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     2401 gtgtgtgagg gtgtgtgcat tacttgggcc tgcacccaga actggatgct gggtaaatat
     2461 tctaccacta agccacactt ccagccctca actgctaaac agatgtacag aaaaccaata
     2521 aatgtgattt tagcaaccaa ggaaatacaa ctagaaagtc cactgaaatt ccatgtcacc
     2581 ccaggcaaaa tgatgattct gtatgtaaag aaacttagat cctggcctga tgacccaggt
     2641 tcaataccta gaactaatgt aaaggtggga gaaggaacca attcatacag actctgtctg
     2701 accctcagct ctgccctgtg gtacacatat tccctgacat aaatatcact cacacgtcca
     2761 aatactattt gtgtttttgg tttttaatac agaaataaat agatataggt ttatattgct
     2821 gataggaatg taatggctgt agagaataat atggaggtta ctgaaggaac taaaaacaga
     2881 accactatca taatccacat gtactactcc tggtggatac tcaagggaaa atatgaagtc
     2941 ggcctcagag tttatcagta catggacagg tgaaaaatta ttttttccag aaatgcctga
     3001 tgtctagagt gtgcctgtga ctgagcctcc agcttatgtg ggactcagtc ctggatccaa
     3061 actccccatt cctacaggac cagaaagtac cttgcaacca catttccagc ccagtggcct
     3121 tagaggtcag ttcagggcct gaggattggt tccagtttgc tcagggttcc ctcgaaatac
     3181 tgcaatgttg cttccagtgg tatctgacat ccatgtgggt atgaaatcct gaagtctgag
     3241 gtgccaaagg ttactgtcag gcctcaagtc tccctttcta tggttctaga ggttactttg
     3301 tgcctgtagc tctgtgttca gtcccatgat tgtagacagg ctatctggtc tgaaattggg
     3361 tatccagtct ccaacaggat tttagaaatc tgtgagtcta atctttctga gttcaaggcc
     3421 atactggtca acagatcgag ttcccagaga accagagcta cacagtgaaa ccctgtatta
     3481 aaaaagaaag gaaggaagga aggaaggaag gaaggaagga aggaaggaag gaagggagaa
     3541 aagaaaagga aagaaaacta aaagaaataa tcctaaagca gcatgaaaga aaacaatagc
     3601 taacaaagaa ctgaaccttg acgctgtgct atgctctggg agctagagat ctgagattaa
     3661 tgtcttatct gagattaatg tcctaccttc catctcatct ccagccagga atgggtggga
     3721 gcaaagtcct tcatttcaaa gctcaggctt tctcctctgg tcaggcggct gccttgttcc
     3781 tgagattcat gctaggggct tctgtattta atattcctgt agctctccct ccttggtatt
     3841 tctgcaactg ggtttgaata ggcaaaggcc accaaacctt gtattcctct tgaggtattc
     3901 ctggattaga agttaactca gagcaaacca gcaattagta gtaatcagct gagctattta
     3961 caggtatgca tgtagagtct ctcctgaatt atgaagtgca tgtgtgctct caaatagaga
     4021 atagagaagt ggccatctgt ctttccaccc tgtcttcccc aatggttatc aggatcctgt
     4081 gcaatctgag tgccctggct tcttagatgt tctcctgact ctagagtctc cattgtctgg
     4141 tgttatttcc atatgctggg aagaactcaa ctgtgttctg aaggatacac agggttagtg
     4201 aaaggagatg aacatgaatg agccttctag acatagaaca agctggcacc tgggaagaag
     4261 cagattgggc tgaagaaaag tgtttttcag gcatccgtca tgccagtaac ataaggtggt
     4321 ggaaattagg aaggtaacct gagcaaggct tccctgtaga gacagtaggt tatctaggag
     4381 gcagctagaa tttttaaccc agagctcagg gagttgttct cagtacatcc tctccaaact
     4441 cactttgtca tgcctgcatt aggtttaaaa tggacttaac tcatccacta gacagcaaca
     4501 atgatgcata taaaaggcat agtctacttg agttctcaaa ctcaaaacca cccaacacaa
     4561 ttccagatcc aacccaggtc acctaaaaag caattttaaa agggaatgaa tgctgccatt
     4621 tatcaagaac ttaaatgcag gacaattcca tttcttaccc ctagaaattc atttattgtg
     4681 tttgggttct caagatggtg actccctatg taactgacga gaccggcggc aactacattg
     4741 cctcaacaca gagacccgat gggacacggc acaagcagct gagggtcaaa gaaggatacg
     4801 tgctccaaga atcccagcct atgaaaaaca agtatgtgaa gtttttcaag agtaaaccgg
     4861 aacttccccc agggcagagc cctgatgcca ccacacaggt caccccatcc agacctgaca
     4921 gtggtgaagc aggcctctcc aagacagcca aacgcaacct gaagcagaag gagaagagga
     4981 ggcagcagca ggagaaagat gcagaggcct tgaacaggac tctttttttt ttttttcttt
     5041 ttttcggagc tggggaccga acccagaaca ggactcttga taaggtgtct ctgagagact
     5101 cagcccagac acccagtgct caccatggcc cccaagccac atctctagct gccttccatg
     5161 cacccgactc tgttggcacc acagagaaag ccaagaagat caagaaccta aggaagaaac
     5221 tgatannggt ggaggagctg cagtaacacc tccagaccgg gcagttcagc agagaacagc
     5281 tgaagaagct gacatggcac aaggttctgg aggaggagct ggaggacttg gagttgggcc
     5341 tgtgaggctt caggagtagg ggagtggact gaagaacaaa ccatggggtt ctctggggtc
     5401 cagggagcat gggccacagc agtccggggg cacccccata ctggctcact ttcccctcct
     5461 atggcccaac tctgtcctct agatcctagg atctctcttc ttcatccctt ctccttctca
     5521 gctccaattt ttgaactttt cccttccatc ccattgttca caatctgagt gctgacccca
     5581 ggtacctctg ctgctgatct gggtgtcttg ttgaaaagga accccgggag ggtgggagtc
     5641 tgtcggagat ctgtggctga gggtacaagg agtacccaag ttttggagtc ttggttcctg
     5701 ttcagtgttt atgaataact tctgtggcca ccaaaaccac cactaccacc tccactaact
     5761 gctcctcctc ctcctcctcc tcatcttcct catctccctc ctcctcctcc tcttcttcct
     5821 tctcctcctc ctccttttca tcttttattt aagaaagtat gaataaattc ttgtagacac
     5881 caaaaaaagt tcatttattg tttgtagcaa acctatgctc tgttgagata tagtggtttc
     5941 catagattta tttattcgct tgtatttgtt tgttgttttc atgtccacag gtgttttgct
     6001 tgcatgtata tctgtgcact agtgtgtgcc tggtgcttaa aaagatcaga agagggcatg
     6061 agatccctgg cactagagtt atgagtgttg agagctgcca cgtgggtact agggctccaa
     6121 cccaggtcct ctggaagagc agccactgtg cttaactgct gattcatctc tccagctcat
     6181 ttccatattt caaatacaga aaagtggaaa tcttgggatt aaccatccag gtagacaaga
     6241 ccaaacaatg accacaccca gctgtatagg ctatgaaatg aagtgttatt tcctttactt
     6301 gtttcctgga cataagcctt ctatgccatc cccctcccct tcttctatat tggtgttccc
     6361 cacccaa
//
