LOCUS       XM_039098412            1621 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus retinoic acid early-inducible protein
            1-gamma-like (LOC120093164), mRNA.
ACCESSION   XM_039098412
VERSION     XM_039098412.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039098412.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1621
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1621
                     /gene="LOC120093164"
                     /note="retinoic acid early-inducible protein 1-gamma-like;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 ESTs, 3 Proteins, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:120093164"
                     /db_xref="RGD:40999559"
     CDS             1..1203
                     /gene="LOC120093164"
                     /codon_start=1
                     /product="retinoic acid early-inducible protein
                     1-gamma-like"
                     /protein_id="XP_038954340.1"
                     /db_xref="GeneID:120093164"
                     /db_xref="RGD:40999559"
                     /translation="MEGGVQAPSLAGRPSRVAVILTEGQASYKVPDNCWSYSLGDRHF
                     REFLSGILCGAAQNPHRFSQLRSHLLLRAGMAENTAAEHPLFTGASCVLVFLSCLGST
                     LCADVHSLSCNLIIRAPTKAEPLWYEGQCSMDGNVFLSSNNVNKTMPLGNQEKMANAT
                     EVWKCVTQWIDLLGQDLRDKVSEIKVHTPKTSGHPTLWVTMLSNHSHGQIISASWELN
                     ISENYSFILDLKTMKWKLINPVPEDIMKEWKDDKTLMKHLNLFIVECSPKFNEFLNQH
                     EERTRSTTRAPDITQPPPTSQVPYKEVLIPVGLIISIIFIIFICICVKRMCCPQGGRE
                     LQLLKDYCINCHKPQRNEGLEETKGEVPNQRTKMLSQEEDPKTLGGPRRASESVELEL
                     QMFSSTGS"
ORIGIN      
        1 atggagggtg gagttcaggc tcccagtttg gcaggacggc cttcccgcgt ggctgtgatc
       61 ctcacggagg gacaagcaag ctacaaagtt cctgacaatt gctggagtta cagccttggt
      121 gaccgacatt ttcgtgaatt tctgagcggg atcctctgcg gggcggcaca gaatcctcac
      181 cgcttctcac agctccggtc acacctgttg ctcagggcgg gtatggcaga gaacacagcc
      241 gctgagcatc ctctattcac aggagcttca tgcgttttgg tttttctgag ctgtttgggg
      301 tctacgctgt gcgctgatgt acactctctt agttgcaact tgatcatcag ggctcctacc
      361 aaagcagaac ctctctggta tgaaggacag tgttcaatgg atggaaatgt tttcctttct
      421 tctaataacg tgaacaagac catgcctttg ggtaaccagg agaagatggc aaatgccacc
      481 gaagtgtgga aatgtgtgac ccagtggata gacctattgg gccaggactt aagggacaag
      541 gtgtctgaaa tcaaagtgca cacacccaag accagtggtc accccacttt atgggtcacc
      601 atgctttcta accacagcca tggacaaatc attagtgctt cctgggaact caacatcagt
      661 gagaattatt ccttcatctt ggacctaaag actatgaagt ggaaactgat taatcctgta
      721 ccagaggaca tcatgaaaga atggaaagat gataagacat taatgaaaca tctgaatttg
      781 ttcatagtag aatgcagtcc gaaattcaat gaattcttaa atcagcacga ggaaagaaca
      841 agatcaacaa caagggcccc agatatcacc cagcctccac ctaccagcca ggttccttat
      901 aaggaagtat tgatccctgt aggactcatc atttccatca tctttattat tttcatttgc
      961 atatgtgtga agaggatgtg ttgtccccaa ggaggtagag aacttcagct gctcaaggac
     1021 tactgcatca actgccacaa gccacagagg aatgaggggc tagaggagac aaaaggagag
     1081 gttcccaacc agagaaccaa aatgttgtcc caggaggaag atcccaagac attgggaggc
     1141 ccaaggaggg catcagaatc tgtggaactg gagttacaga tgttttcaag tactgggagc
     1201 tgaaccgagg acatctccaa gaacagcaag ggatcttaac tactgagcct tcacgccaaa
     1261 cgataaatga atttttcctt taaaaatgat ttttattttg tttatgtata tgagtacact
     1321 gtctctgtct tcacacacac cagaggtggg catcagatcc catcacagat cgctctgaac
     1381 cactatgtgt tgctgagagt tgaactcagg acctctggag agtgagcagt tctcttaact
     1441 gcccagccat ctcttcagat taataaattt cttaaaaaga aaatatggcc ttaatattat
     1501 tcaatacagg ggaaggcctt aaccaaactt cacgataaag ttgaatgttt cagattcact
     1561 cacagtaaaa tgaccatgga gtgtaatggc cagttatgac gtcatttgta gcattggagc
     1621 a
//
