LOCUS       XM_039093894            1836 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PHD finger protein 11-like
            (LOC120093163), transcript variant X1, mRNA.
ACCESSION   XM_039093894
VERSION     XM_039093894.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093894.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1836
                     /gene="LOC120093163"
                     /note="PHD finger protein 11-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 8 ESTs, 9 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     65 samples with support for all annotated introns"
                     /db_xref="GeneID:120093163"
                     /db_xref="RGD:41161363"
     CDS             388..1398
                     /gene="LOC120093163"
                     /codon_start=1
                     /product="PHD finger protein 11-like isoform X1"
                     /protein_id="XP_038949822.1"
                     /db_xref="GeneID:120093163"
                     /db_xref="RGD:41161363"
                     /translation="MAEETAPPCGPVSTGDSLSPERMEKRTCALCPEGHEWSVIYFAP
                     SANIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSLCNKGGAT
                     VGCDLSSCRKSYHYVCAKKDHAIPQVDEDLGTYKIFCPEHPPQQEETTERADSPSVKK
                     TGKKKSLSSGPRTEPKKMKFSSFKRLMKEEPHGHKDAAVKAPFLKKCLEAGLLTELFE
                     QILEKMDSIHGRFMDETASESDYEGIKTLLFDCGLFGDILRKFQEVIKSKTCEYEERL
                     NQMKQKLEALADLQENLCSFQECGDLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGD
                     SL"
ORIGIN      
        1 gcatggggca ggtgtgtgtg tgctgtagtg cacagcaggg ttagggagcc aagggaagca
       61 tccagaaagc ctcctgcccc tgctttcttc cttcttctct gcatgatgac tggagcctgt
      121 tagtcatata aagcatttcc tcccctaagg tatttttggc cacagtttcc tcacattggc
      181 agagaaacca gtcctgagca cttttaacct gactatgcag tgttgaaaat ctgccagcat
      241 gcactgctcc cagagtgcac tccctccgga ctgggtcttc ccgatcacca cacaagctta
      301 cagaaacgaa actaaaagct agaagcagaa cctgtaaacc ctaaactaga aactcagttg
      361 cacttccagg agtgcaagtg cccagtcatg gccgaagaga cagcaccacc atgtggccca
      421 gtctcaactg gtgacagtct gtctccagag aggatggaga agaggacatg tgccctctgc
      481 cctgagggtc atgagtggag tgtgatttac tttgcaccat cagcaaatat agctgctcat
      541 gaaaactgtt tgctgtattc atcaggactg gtggagtgtg gtcctcatga tccacgtaat
      601 ccagccagaa gctttgctgt aaagtcagtg aagaaagaga tctggagagg gagaagattg
      661 aaatgctcac tgtgtaacaa aggaggtgcc accgtgggat gtgatttgtc atcctgtagg
      721 aagagttacc actatgtctg tgccaaaaaa gaccacgcaa ttcctcaagt tgatgaggat
      781 cttggaactt acaaaatatt ttgcccagaa catcctccac agcaagaaga gaccactgaa
      841 cgtgctgata gtccaagcgt gaagaagaca ggaaagaaga aaagtctctc atcgggccct
      901 cgcacagagc caaaaaagat gaaattcagt agctttaaaa gactcatgaa ggaagagcct
      961 cacggccaca aagatgcagc tgtcaaagct ccttttctta agaaatgcct ggaagcagga
     1021 cttcttactg aattatttga acagatacta gaaaaaatgg attcaattca tggaagattc
     1081 atggatgaga ctgcttcaga gtcagactat gaagggatca agaccttact gtttgactgt
     1141 ggactatttg gagacatact aagaaaattc caagaagtaa tcaagagtaa aacttgtgaa
     1201 tatgaagaaa ggctgaacca gatgaagcag aagcttgagg cactcgcaga cttacaagag
     1261 aacctgtgct catttcaaga atgtggggac ctggacccct caggctctac ctcagggtcc
     1321 ttgctacctc ctgaggacca ccagtgcaga tgccaggagt ctcctgaagt gcaagcaggc
     1381 tcaggagaca gcctgtgaca gatccagtcc cctccagctc tgacctgcta ctgctcagcc
     1441 aggctccata cctgacaggt tgtttcttgg ctcctctcta gtcatctcac ttgtcctgcc
     1501 ttctcctgac agtaacagct gttcctcagg tcaactggat caggccccca tgtcctctaa
     1561 ggagcaggaa gtcctcctac ctaccctacc caccctagtc aggggcagcc acaccacagc
     1621 ctttgctcat ccttttgtgg aatcttagag ctttcttctt gcttctgcta ctcctgcagt
     1681 aggtctgtgt catcatggtc tcctctcagt attagtgact tcatcagaat ggagcagagc
     1741 ctcactcctg tgcatagctc gctggtaccc tgggtttctg ctcactacca ccttcccaac
     1801 attgagcaca cttaataaat gcttgacaaa acactg
//
