LOCUS       XM_039080113            2543 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus leucine-rich repeat and IQ
            domain-containing protein 1-like (LOC120093145), mRNA.
ACCESSION   XM_039080113
VERSION     XM_039080113.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086025) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2543
                     /gene="LOC120093145"
                     /note="leucine-rich repeat and IQ domain-containing
                     protein 1-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 ESTs, 6 long SRA reads"
                     /db_xref="GeneID:120093145"
                     /db_xref="RGD:41273020"
     CDS             260..871
                     /gene="LOC120093145"
                     /codon_start=1
                     /product="leucine-rich repeat and IQ domain-containing
                     protein 1-like"
                     /protein_id="XP_038936041.1"
                     /db_xref="GeneID:120093145"
                     /db_xref="RGD:41273020"
                     /translation="MLKRAKKMKSRKLRKKLEPSVRLALFKKNKNKLSVTKSSKKSQL
                     RRDNYFADEEEEAASKATAAKEKLERSKEYTYQWLHTQVGFPEATSSRNVKCNHFLPE
                     LDPDVLNGGRVQLVARLVSREDTDLDLFSMTSASTLSVNKEKKSQTHRYSTGSSSGSN
                     KGIIAPMITHTRPSIKERISFRDNPVQLSGGWGSGKRKVKSST"
     polyA_site      2543
                     /gene="LOC120093145"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ctatgctgtg aacactcgga ctttgagaca tgatgaaact tcacccccgg taccagctca
       61 tccagctcaa gcatggcttt gcaatgagag agaaaatctg ttgtcgtcag agcacacgca
      121 gttcagtagc agatcagaaa gtggaacttt atcctggaca cctgaatcaa aatcaagtag
      181 gaagagttta ctgcaatctg aaaaagagga aaaaatttca gaagaatggg gctttaagga
      241 tatctctaca gctcagcaaa tgctaaagag agcaaagaaa atgaaatcaa ggaaactaag
      301 gaaaaaatta gaaccgtctg tgcgactagc attattcaaa aagaacaaaa ataaactttc
      361 ggttaccaag tcatcaaaga aatcacagct cagaagagac aattactttg cagatgagga
      421 ggaagaagca gcctccaagg caactgctgc aaaggaaaag ttagaaagga gtaaggagta
      481 tacctaccag tggctgcata cacaagttgg ctttcctgaa gcaactagtt ccagaaacgt
      541 gaaatgcaat cacttcttgc ccgagttaga tccagatgta cttaatggtg gaagagttca
      601 acttgtggca agacttgtaa gcagagaaga cacggattta gacctttttt ccatgaccag
      661 tgcaagtact ttgtctgtga acaaagaaaa aaaaagccag acacacagat actcgacggg
      721 atcctcaagt ggctcaaaca agggaataat tgcaccaatg ataacacaca ccagaccttc
      781 tattaaggag cgcatatcat tccgcgacaa tcctgttcaa ctcagcggtg gctggggaag
      841 tggcaaaagg aaggtgaaat cgtccactta atagtcccag ctccagcact ccaaacacca
      901 cgcacatgac ttagttaact ctgcagatac ccggtcctgt taccagacag aaacaaggtt
      961 cccgaaacat tgcacttact gtttcattat gatatttcat aatgttgtct tctaggcgca
     1021 gccactttct cgtttattgc tagagttaac agatcctcgt gcgttcttgt ggagacaccg
     1081 cagggcaatt tgtatgaaca ttttctcctt tggtttttat gtaatgatgc atgtattcaa
     1141 attattcttt taactccttt aatataatac ataaatgaat ataactatag atgttgctta
     1201 gagaaatatt agtgaatagt tattgcatta ataagtttga atgtccccaa tttcttagca
     1261 tcttagaatt cattatgtgt gtgtgtgtgt gtgtgtgcgc cttttaagct aaagtgaaat
     1321 ataaatttaa acatttatca acccagtaat ttgaaaataa atctgtaatg ttttactcaa
     1381 gtgtgtttta tccttgtcta taagagatgt atgtgaattc tgattcttta aaacaatcca
     1441 actcacacat actcaatcac ttttaatttt gttaaagcac ctttaaaatg ccatttgatt
     1501 tttttttcag agctgaaaat gatcatttgc aagtattagt atattttctt tacttgtaga
     1561 caagttttag taaagtctta ctagtgtgag ggtaattctc cccatgttat ctctgcaagt
     1621 acagtatgca aaatgccgtt gggctctggg cttagaggct ctatcgctct ccatccggaa
     1681 tgccttttag gaaactaaac cacgcactcc agtgactctt cctagtttct ctgtgtaata
     1741 ggatccagtg aacttcaggt ttctcttttg tttctcctgc tctccagtga aattctttac
     1801 ccagagatga ctaaacagat ttcaagatac atttgtttac ttttttaaaa tttaatcccc
     1861 cccatacttt ctggactcct gttgcatttc aaacctgtaa atctctttta acctgattga
     1921 gatagaaatg ttaatgagcc ttgagctgtc aatctataaa gaaaacattg attcatatgt
     1981 ttcaatgtag aaattgagct ctacatgtat ttgttttgtg aacagttagg tcatcccttt
     2041 gctaacaaca tccacaaatc agtataaagt aatgatggaa aatattttat ctcagcttat
     2101 tttcaactct gaaggaaaaa aaacacatta aaagtgacat tgatagggtt ttatggttca
     2161 taaacctacc caatgaagtg gaaaggctag tatgagaaat gagatgttta ttattaaact
     2221 gttttcatat gtgaaataaa ctttgtagtt tttttcttct gtaacttttg tgattttttt
     2281 catagtagta attgtgaaga tcattggtat tgatgacttt aaatctgtag gcaatgatta
     2341 ataaatgtca ataaaactgt ttccaagaat tatggtgttt acatcagaag ttcttttgaa
     2401 tgtagtttgt tgcatttaac ctaaaagtga tcatccaaag aaacttataa tcccaaattt
     2461 gccacttttt attctagtag tatatttgtg ttcatgaaac tggtattttt aaaatttaat
     2521 aaaacattaa gtggttgaac aaa
//
