LOCUS       XM_039099256            2344 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus H-2 class I histocompatibility
            antigen, Q7 alpha chain-like (LOC120093125), transcript variant X2,
            mRNA.
ACCESSION   XM_039099256
VERSION     XM_039099256.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099256.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2344
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2344
                     /gene="LOC120093125"
                     /note="H-2 class I histocompatibility antigen, Q7 alpha
                     chain-like; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, 1450 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 8 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:120093125"
                     /db_xref="RGD:41288091"
     CDS             68..1159
                     /gene="LOC120093125"
                     /codon_start=1
                     /product="H-2 class I histocompatibility antigen, Q7 alpha
                     chain-like isoform X1"
                     /protein_id="XP_038955184.1"
                     /db_xref="GeneID:120093125"
                     /db_xref="RGD:41288091"
                     /translation="MGSLVHCTLLLLWLAAALAATHNRAGSHSLRYFATAISRPGLGE
                     PRFTAVGYVDDTQFMRFDSDAENPRAEPSALWVERMEPEFWKKETRIFKRHTQNFRTC
                     LQNLLRKYNQSQDGSHTIQDMHGCYVGPDGRFQSGHYQHAYDGHDYITLNEDLSSWTA
                     ADAVAQITQHEWEQDGVAEEYKAYLEGTCVETLHRLLENWEETWQHLEPPKTHVTHHP
                     SPEGDVTLRCWALGFYPADITLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPS
                     GEEKKYTCHVEHEGLPEPLTLRWEAPPSTVSNTAMIAVLVVLGAVTIIGAVVAVVRKR
                     RRNTGGKGGDYAPAQSSNSVHSCDSSLEA"
ORIGIN      
        1 gtagctgtga ttgcaagtta caaatcccag gatttgtatc actgcacttg gatcccccta
       61 cgtgagaatg gggagtcttg tgcattgcac tctactgctg ctatggcttg cggccgccct
      121 ggccgcaacc cataaccgcg caggctcaca ctcgctgcgt tatttcgcca ctgccatttc
      181 ccggcccggc ctcggggagc cacggttcac cgctgtgggc tacgtggacg acacgcagtt
      241 tatgcgcttc gacagcgacg cggagaatcc gagagcggag ccgagcgcgc tgtgggtgga
      301 acgaatggag ccggagtttt ggaagaagga gactcggata ttcaagaggc acacccagaa
      361 tttccgaact tgccttcaga acctgctgcg caagtacaac cagagtcaag atggttccca
      421 cactatccag gatatgcacg ggtgctatgt gggacctgat ggtcgcttcc aaagcgggca
      481 ctatcaacac gcctatgatg gccatgatta catcaccctc aacgaggacc tgagctcctg
      541 gaccgcagca gatgcagtgg ctcagatcac tcaacacgag tgggagcagg atggtgtagc
      601 tgaggaatac aaggcctacc tggagggcac gtgcgtggaa acactccaca gattactgga
      661 gaactgggag gaaacttggc aacacttaga acccccaaag acacatgtga cccaccaccc
      721 cagtcctgaa ggtgatgtca ccctgaggtg ctgggccctg ggcttctacc ctgctgatat
      781 caccctgacc tggcagttga atggggagga cctgacccag gacatggagc ttgtggagac
      841 caggcctgca ggggatggga ccttccagaa gtgggcagct gtggtggtgc cttctggaga
      901 ggagaagaaa tacacatgcc atgtggagca tgaggggctg cctgagcctc tcaccctgag
      961 atgggaggct cctccatcca ctgtctccaa cacagccatg attgctgtcc tggttgtcct
     1021 tggagctgtg accatcatag gagctgtggt ggctgttgtg aggaagagga ggagaaacac
     1081 aggtggaaaa ggaggggact atgctccagc tcaaagcagc aacagtgtcc acagctgtga
     1141 ctcctctctg gaggcttgaa aagccctcct tcctggtcca gcagacatga tgggaaatct
     1201 acatcctgtc agtttcatgc tgccctgaac tgcagcctct catttccaga ccaaacatag
     1261 aaatctgaat gtgaattcga ttgtacaaat ctttgacccg aggggttgat taatgggtaa
     1321 attaagggat tgagaatatt ctgaattttg cagagaaaat aaatggcaat gtggagaacc
     1381 ttccagaacc tgtgtctcct gtgctgtcag gtgggacacg gggaggctgt ggtcatgccc
     1441 atctggcgcc cacctcatga gtcctttgct gtggtctggt cactcctctg ctctgtcctc
     1501 ctgagatctt ttctctttgt cacttggtgg aacgagggcc agacagactg tttggaggag
     1561 acagggggac gaccttagcc ttgttctgtc cccagcatta taagcatctg cagcaagtca
     1621 gccttggctc agtctgagct ctggttctgc acccttcttc tgtgtttatt tctgtgtctt
     1681 ttgactttgt atggaggaag aggcctgttc cggttcctgt gagtggtacc cgtctcattc
     1741 tcctttaggg actctgactc atggcattaa gtgtttttcc gtccttgtcc cttcaaggcc
     1801 caactaggtt cctgcactgg gctgagaaca tgaacttctt ccaaggagca catgttcccc
     1861 atccagggtc tttgccttga gattcttccc tccctccacc caaccttcca gagtctaagt
     1921 cctgtctgta ggaccaacag aaagcagcag ggtctctacg agaatccagt cctgtgggga
     1981 ctgtgttctg ctctgcctca ctttgtaaca tgctattcac cctcactcag aaaacatcca
     2041 tcaggttcac aagttcctga gctcaagttt ctggtgtggg ggagcaactc aatgggagca
     2101 aaggtgactg ttttgggttc tcacaccagc acttgctaaa cgcattccag ctttgacact
     2161 ccccagtggg gctctccaat ggaagggctt gctggatgta gaaggctcag ctgctgtcag
     2221 tcaggagcta agtggtgcaa ggactgtatg atgtaaggaa aaatacttcc acacactaat
     2281 gccgcctctc tctctctctc tctctctctc tctctctctc tctctctctc tcctctcccc
     2341 cttc
//
