LOCUS       XM_039108860            1262 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus T-cell surface glycoprotein
            YE1/48-like (LOC120093104), transcript variant X1, mRNA.
ACCESSION   XM_039108860
VERSION     XM_039108860.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108860.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1262
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1262
                     /gene="LOC120093104"
                     /note="T-cell surface glycoprotein YE1/48-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 69 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 61 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:120093104"
                     /db_xref="RGD:41142959"
     CDS             179..982
                     /gene="LOC120093104"
                     /codon_start=1
                     /product="T-cell surface glycoprotein YE1/48-like isoform
                     X1"
                     /protein_id="XP_038964788.1"
                     /db_xref="GeneID:120093104"
                     /db_xref="RGD:41142959"
                     /translation="MSEQEVSYSTVRFKKSSGRQNQVRPEETQTAREAGHTERSVPWQ
                     LIVVALVILCSLRLVAVGMILTNIFQYAHEKHGVHEILSHKYNYSTMQNDIDLKEEML
                     RNISKNCSRGNDLLQSLIREQKRWYSETKTVIPSSQHTGKNVEIHWFCYGIKCYYFIL
                     DKKTWIGCKQACQKSRLSLLKIDEEEELKFLRLQVLSDQYWIGLSYNKAKQEWSWIDN
                     GQSELSLNLKKYNVKDGDCMFLSKTRLENAMCSNPYPCICQKRLDKFPH"
ORIGIN      
        1 cagaaagtca tgaggttgag tatcactcag aggaaagtta gttttgcctt taatctcgga
       61 gcctctgggg gatacagatg aagcaattcc ctttaacaga atcaattcag tgtagagaca
      121 gagaaatcat tgaaggccca actttcactg aaaacaaact tcatgtacca tttccaaaat
      181 gagtgagcag gaggtctctt actcaactgt gagatttaaa aagtcttcag ggcggcagaa
      241 ccaagtgagg cctgaagaga ctcaaacggc cagagaagct ggccacacag agaggtcagt
      301 cccctggcag ctcattgtgg tagctcttgt aatcctctgt tcccttcggc tggtagctgt
      361 tggaatgatc ctgacaaaca tttttcagta tgctcatgaa aaacatggag tgcatgaaat
      421 tctaagccac aagtataact acagcaccat gcaaaatgac atcgatttaa aagaagaaat
      481 gctaaggaat atttctaaaa attgcagtcg aggcaatgat cttctgcaat ctctaatcag
      541 agaacagaaa agatggtaca gtgaaactaa gactgttata ccttcctctc agcacacagg
      601 caaaaatgtt gaaatacact ggttctgcta tggaataaaa tgttattatt tcattctgga
      661 caaaaaaacc tggatcggat gtaaacaagc atgccagaaa tccagattat cccttctgaa
      721 gatagatgaa gaggaagaac tgaagttcct tcggctccag gttctttcag accagtactg
      781 gattggattg tcatacaata aagcaaaaca ggaatggtca tggattgata atggccaatc
      841 tgaattatcc ttgaacctaa agaaatacaa tgtaaaggat ggagactgta tgttcttatc
      901 taaaacaaga ctagaaaatg ctatgtgctc caacccctac ccatgtattt gtcagaagag
      961 actggataag ttccctcatt gactctccaa caagagttaa aggatttagt ctgctgtgca
     1021 aacagcgaga tgagctggaa gagtgtggga atgttctctg gaatctgatg tggcagagca
     1081 gaggcttctt ccatcctggt gaagacagga cacattttct ctggttcatg gacatggttt
     1141 gcttcaaagt ctccaggact ctgctctttc tgatttctta aactcttata caattaaatc
     1201 aaatcccaat aaccaacctg tatatttcat tatgattaga ataaatcctg ttacttgaaa
     1261 tt
//
