LOCUS       XM_006252971            1826 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus putative protein TPRXL (LOC120093089),
            transcript variant X1, mRNA.
ACCESSION   XM_006252971
VERSION     XM_006252971.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051351.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006252971.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006252971.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1826
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1826
                     /gene="LOC120093089"
                     /note="putative protein TPRXL; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 64 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:120093089"
                     /db_xref="RGD:41373121"
     CDS             552..1259
                     /gene="LOC120093089"
                     /codon_start=1
                     /product="uncharacterized LOC729966 homolog isoform X1"
                     /protein_id="XP_006253033.1"
                     /db_xref="GeneID:120093089"
                     /db_xref="RGD:41373121"
                     /translation="MAGSRLLPLTLSLLLLARIGDSSVVLTCTGVAFTLLWESVITNT
                     SPTTESIQTTSNPTSQSTETTPASTSPSLHPTILETTSSPHSSSNPTSLETTSSPHSS
                     SNPTSLETISSPHSSSYPTSGSASPEPETASFPSSVFPSSEPTTTPQFTNLAPQGSPT
                     SSSPGQDAGSLWIPTSHRNPGVVIAVCLLVSVLLIGSVFIAVRHFNRDVPAFRNLDTV
                     SMGSVSQRLPFADRLQS"
ORIGIN      
        1 taccactgag ctaaatcccc aacccccgag accttatctc aaaaacaaaa tttaacgaca
       61 aaacgtgaga acctacctgg cagggaccag actactttgc cttccttagc ttgcttgtac
      121 atgagagtac ctcctttaga aaatgctaga aggttctagc tgcatcctcg gtgcagtgag
      181 gtgctagacc tacctgagaa ggcatctcca cctaggtgag ccagaggaag agacaggagg
      241 gcatcctcaa tccccactta gaggagcctg gaggcccgag caacaccgag tattcaagtc
      301 aggtttgggg cagttacaga aggggtattc cggggtatct ggggacagag ggcaagtgtc
      361 ttgaggcagc gttagaagct tcaggaacac agtccagctc cgtgccgagg agggtgccac
      421 tgaggaaggg cgggactgga gccccagaac cccgcgcagc tcgccattcc tacggtccgc
      481 cagcaggggc cgcgcgtggg cgaggcgctg ccaacctggg cgcgcacctg tagcctgggc
      541 ggaccgcaag aatggcggga tcccggctgc tgcccctgac gctgtctttg ctgctgctcg
      601 cgagaatcgg agactcctcc gtcgtcctta catgtacagg tgttgctttt acactactct
      661 gggagagcgt aataacaaac acctccccaa ctacagaatc aatacagaca acctccaatc
      721 ccacctccca aagtacagag acaacccctg cgtccacctc tccaagtctc caccccacaa
      781 ttctggaaac cacatcctct ccacactcca gctccaaccc cacaagtctg gaaaccacat
      841 cctctccaca ctccagctcc aaccccacaa gtctggaaac catatcctct ccacactcca
      901 gctcctaccc cacatcaggc tcagcctccc cagaaccaga gacagcttct ttccccagct
      961 ctgtgttccc cagttctgag ccaaccacca caccccagtt cacgaacttg gctccacaag
     1021 ggtcacccac ttcgtccagt ccaggccagg atgcaggcag cctctggatc cccacatcac
     1081 acaggaaccc cggtgtggtg attgctgtgt gtctgcttgt gtctgtctta ctcattggct
     1141 ctgtgttcat cgctgtgaga cattttaatc gagatgtgcc agcttttcgc aatctggata
     1201 cggtatccat gggcagtgtg agtcagaggc tgccattcgc tgaccgccta cagtcgtgac
     1261 tctcagagac ctagagagat ggtgtgggtg acacctggaa agaagagttt ctggaaactc
     1321 ccctcccccg ctatcctgac ctggggataa gggtcaggag gacggctgga gcccaggggt
     1381 ttcaggccca cacatctagt accccactca gttattacat caatccagga gtgatggagc
     1441 acacctgtca tccctgcact tgggaagtag agacaggagg atcaggtgtt caagtccacc
     1501 ctgaactaca taaggggttt gaggtcagcc tgggctgcat gagactctgt ctttaaaata
     1561 attgtttttt ttttttttgg agggggaggg gcagcatggt tcaatggtta agaacactgg
     1621 ctgctttcca gaggaccagg gctctgtttc cagcaccctc gtgtaaactc acaaccatca
     1681 ataattccag tcctagggga tccagtggcc tcttttggcc tctgctgtca ccaggctccc
     1741 agctgatata cagacataca tgcagacaaa acacattaaa aaataaaact aaataaacac
     1801 aaactaagta aagtcctttc cattca
//
