LOCUS       NM_001419888            1469 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus PHD finger protein 11-like (LOC120093070), mRNA.
ACCESSION   NM_001419888 XM_039093890
VERSION     NM_001419888.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1469)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Apr 20, 2023 this sequence version replaced XM_039093890.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.429700.1,
                                           SRR26360190.1436064.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on manual assertion, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-75                JAXUCZ010000015.1  37725336-37725410   c
            76-197              JAXUCZ010000015.1  37722676-37722797   c
            198-305             JAXUCZ010000015.1  37713939-37714046   c
            306-439             JAXUCZ010000015.1  37710657-37710790   c
            440-489             JAXUCZ010000015.1  37708815-37708864   c
            490-554             JAXUCZ010000015.1  37707910-37707974   c
            555-618             JAXUCZ010000015.1  37707097-37707160   c
            619-750             JAXUCZ010000015.1  37706447-37706578   c
            751-822             JAXUCZ010000015.1  37705010-37705081   c
            823-1469            JAXUCZ010000015.1  37702585-37703231   c
FEATURES             Location/Qualifiers
     source          1..1469
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..1469
                     /gene="LOC120093070"
                     /note="PHD finger protein 11-like"
                     /db_xref="GeneID:120093070"
                     /db_xref="RGD:40946148"
     exon            1..75
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..1037
                     /gene="LOC120093070"
                     /codon_start=1
                     /product="PHD finger protein 11-like"
                     /protein_id="NP_001406817.1"
                     /db_xref="GeneID:120093070"
                     /db_xref="RGD:40946148"
                     /translation="MAEETAPPCGPVSTGGSLSPEKMEKRTCALCPEGHEWSVIYFAP
                     SANIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSLCNKGGAT
                     VGCDLSSCRKSYHYVCAKKDHAIPQVDEDLGTYKIFCPEHPPQQEETTERADSPSVKK
                     TGKKKSLSSGPPTEPKKMKFSSFKRLMKEEPHGHKEAAVKAPFLKKCLEAGLLTELFE
                     QILEKMDSIHGRFMDETASESDYEGIEILLFDCGLFGDILRKFQEVIKSKTCEYEERL
                     NQMKQKLEALADLQENLCSFQECGDLDPSGSTSGSFLPPEDHQIQESPEVQAGSGDSL
                     "
     exon            76..197
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     exon            198..305
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     exon            306..439
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     exon            440..489
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     exon            490..554
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     exon            555..618
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     exon            619..750
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     exon            751..822
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
     exon            823..1469
                     /gene="LOC120093070"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agttgcactt ccaggagtgc aagtgcccag tcatggccga agagacagca ccaccatgtg
       61 gcccagtctc aactggtggc agtctgtctc cagagaagat ggagaagagg acatgtgccc
      121 tctgccctga gggtcatgag tggagtgtga tttactttgc accatcagca aatatagctg
      181 ctcatgaaaa ctgtttgctg tattcatcag gactggtgga gtgtggtcct catgatccac
      241 gtaatccagc cagaagcttt gctgtcaaat cagtgaagaa agagatctgg agagggagaa
      301 gattgaaatg ctcactgtgt aacaaaggag gtgccaccgt gggatgtgat ttgtcatcct
      361 gtaggaagag ttaccactat gtctgtgcca aaaaagacca cgcaattcct caagttgatg
      421 aggatcttgg aacttacaaa atattttgcc cagaacatcc tccacagcaa gaagagacca
      481 ctgaacgtgc tgatagtcca agcgtgaaga agacaggaaa gaagaaaagt ctctcatcgg
      541 gccctcccac agagccaaaa aagatgaaat tcagtagctt taaaagactc atgaaggaag
      601 agcctcacgg ccacaaagaa gcagctgtca aagctccttt tcttaagaaa tgcctggaag
      661 caggacttct tactgaatta tttgaacaga tactagaaaa aatggattca attcatggaa
      721 gattcatgga tgagactgct tcagagtcag actatgaagg gatcgagatc ttactgtttg
      781 actgtggact atttggagac atactaagaa aattccaaga agtaatcaag agtaaaactt
      841 gtgaatatga agaaaggctg aaccagatga agcagaagct tgaggcactc gcagacttac
      901 aagaaaacct gtgctcattt caagaatgtg gggacctgga cccctcaggc tctacctcag
      961 ggtcctttct acctcctgag gaccaccaga tccaggagtc tcctgaagtg caagcaggct
     1021 caggagacag cctgtgacag atccagtccc ctccagctct gacctgctac tgctcagcca
     1081 ggctccatac ctgacaggtt gtttcttggc tcctctcttg tcatctcact tgtcctgcct
     1141 tctcctgaca gtaacagctg ttcctcaggt caactggatc aggcccccat gtcctctaag
     1201 gagcaggaag tcctcctacc taccctaccc accctagtca ggggcagcca caccacagcc
     1261 tttgctcatc cttttgtgga atcttagagc tttcttcttg cttctgctac tcctgcagta
     1321 ggtcgtgtca tcatggtctc ctctcagtat tagtgacttc atcagaatgg agcagagcct
     1381 cactcctgtg catagctcgc tggtaccctg ggtttctgct cactaccacc ttcccaacat
     1441 tgagcacact taataaatgc ttgacaaaa
//
