LOCUS       XM_039091215            1944 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus endogenous retrovirus group K member
            10 Gag polyprotein-like (LOC108353429), mRNA.
ACCESSION   XM_039091215
VERSION     XM_039091215.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086031) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1944
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1944
                     /gene="LOC108353429"
                     /note="endogenous retrovirus group K member 10 Gag
                     polyprotein-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 Proteins"
                     /db_xref="GeneID:108353429"
                     /db_xref="RGD:11477275"
     CDS             1..1944
                     /gene="LOC108353429"
                     /codon_start=1
                     /product="endogenous retrovirus group K member 5 Gag
                     polyprotein-like"
                     /protein_id="XP_038947143.1"
                     /db_xref="GeneID:108353429"
                     /db_xref="RGD:11477275"
                     /translation="MGSCLSIGGGCRACSRDNRAPGQTRRLSGSRFEGVPPRILGTSK
                     IADRDSWRPNRDPRTRACCCLVFFLFVFYPLALELQSLQEWNGLTEGNCSPAYGEEVG
                     EGESLIMGGTGSKGQKMFVSVLQRLLAERGLKVKESTAVEFYQFLMKVSPWFPEEGGL
                     NLEDWKKVGRKMRRYTVKHGEETIPKQAYPIWLQMREILTEQSDLVLLSAEAQSEKDV
                     EEPVYDLPYDDVTEVKVKEVKEKTYGTNKPLVKKDPSKMNLLGLDDDNDLSPGDWDDL
                     EEETARYHHDDDLVFTVKKGSKGSKARPIPAPHRKLLPPVGFAGAMAQAREQGDTSFV
                     FPVVYTGDSDDEDSPTWEPLKTLKELQAAVRTMGPSAPYTIQIVDMVASQWLTPHDWH
                     QTVKATLSPGDYILWRTEYEDKSKETVQKSSGKRGPKVTLEMMLGTGAFVAPASQVKI
                     PKFILKEVTTNAVLAWRAIPPPGSKKTVLTGIKQGNEESYETFVSRLEEAIHRMMPPG
                     EGAKMLLKQLAWENANSLCQDLIRSVRKTGSIQDYVKACIDASPAVVQGMAYAAAMRG
                     QKYSAFVKQTYGGNNARGNSGPTCYSCGEVGHLKKDYKRGQGEGKRPPPGLCPRYKKG
                     RHWKSECRSKYDKDGNLITDKKE"
ORIGIN      
        1 atgggaagct gcctatctat tggaggtggg tgccgcgcct gcagcagaga taaccgagct
       61 ccggggcaga caagacgcct gagtgggagc cggttcgagg gggtcccccc gcggatcctt
      121 ggaacttcca agatcgccga ccgcgacagc tggcgcccga acagggaccc ccggacacgt
      181 gcatgctgtt gtcttgtgtt tttccttttt gtcttttatc ctcttgcttt agaattgcaa
      241 tcactacagg agtggaacgg actcaccgaa gggaactgca gtcccgccta cggagaagaa
      301 gtaggtgagg gtgagtcact cattatggga ggaacgggct caaaaggaca aaaaatgttt
      361 gtctcagtat tacagaggct cttagcagaa agaggcctca aagtcaagga aagtactgct
      421 gtagaatttt atcaattcct catgaaggtt tccccctggt tcccagaaga aggaggttta
      481 aatctagaag attggaagaa agtaggtaga aaaatgagaa gatacaccgt taagcatgga
      541 gaagaaacca ttcctaaaca ggcatatccc atatggttac agatgagaga aatcttgaca
      601 gaacagtctg atttggtctt gttatcagct gaggcacaat cagagaagga tgttgaggaa
      661 ccagtgtatg atttgcctta tgatgatgtt actgaagtta aggttaagga agtcaaggaa
      721 aagacttatg gaactaataa accccttgtt aagaaagacc cctcaaagat gaacctcttg
      781 ggattggatg atgacaatga cctctcccca ggggattggg atgatctaga agaggagaca
      841 gctagatatc accatgatga tgatctggtc tttacagtga aaaagggatc caaaggatct
      901 aaagcacgcc caataccagc ccctcacaga aaactactac ctccagtggg tttcgcaggg
      961 gccatggctc aagctaggga gcaaggtgac acttccttcg ttttcccagt ggtctacaca
     1021 ggagacagtg atgatgaaga ttcccccaca tgggaaccat taaaaacatt aaaggaatta
     1081 caagctgcag tacgaaccat ggggccttcg gcgccctaca ctatacagat agtggacatg
     1141 gtggccagcc aatggttaac tccgcatgac tggcaccaga ctgtcaaagc aactctctcc
     1201 ccgggggatt atatcctctg gaggacagaa tatgaagaca agagcaaaga aactgtacaa
     1261 aaatcctcag gaaaaagggg gcccaaggta actttagaga tgatgctggg gacaggagca
     1321 tttgttgccc ctgcttctca ggtaaaaata cccaagttta tcctaaaaga ggttactacc
     1381 aacgctgttt tggcctggag agcaatcccg cctcctgggt caaaaaagac tgtcttgaca
     1441 ggaataaaac aaggaaatga ggaatcctat gagacctttg tctctagact ggaggaagct
     1501 atccacagaa tgatgccccc aggagaaggg gctaaaatgc tcttaaagca attggcatgg
     1561 gaaaatgcta attcactatg ccaggatctt ataagatcag tgagaaaaac gggaagtata
     1621 caggactatg tcaaagcctg catagatgcc tcccctgcag tggtacaggg gatggcctat
     1681 gctgctgcca tgagaggaca gaagtactca gcctttgtta aacaaacata tggaggaaac
     1741 aatgctaggg gcaactctgg ccccacttgt tactcatgtg gagaagtggg acatttaaag
     1801 aaagattaca aaagaggtca aggggagggc aaacgccccc ctcctggcct gtgcccacgc
     1861 tacaagaagg gcaggcattg gaaaagtgag tgtagatcaa agtatgacaa ggatggaaat
     1921 ttgattacag ataaaaagga gtaa
//
