LOCUS       XM_039099259             451 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S28 pseudogene
            (LOC108353424), mRNA.
ACCESSION   XM_039099259
VERSION     XM_039099259.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099259.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..451
                     /gene="LOC108353424"
                     /note="40S ribosomal protein S28 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 long SRA reads, 7 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108353424"
                     /db_xref="RGD:11419125"
     CDS             152..361
                     /gene="LOC108353424"
                     /codon_start=1
                     /product="40S ribosomal protein S28-like"
                     /protein_id="XP_038955187.1"
                     /db_xref="GeneID:108353424"
                     /db_xref="RGD:11419125"
                     /translation="MDTSRVQPIKLARVTKALGGTGSQGQCTQVRVEFMDDTSRSIIR
                     NVKGPVLESDVLTLLESEREARRLC"
ORIGIN      
        1 tgtaagagag catgctgagc aagacagggg aagcaagcca gtaagcaaca gtccatggct
       61 tctgtatcag ctcctgcctt cgggatcctg ctctgtttga gttcctgtcc ttcaagaatg
      121 aacagcaact ctccgctaga tctccgccat catggacacg agtcgcgtgc agcccatcaa
      181 gctggctagg gtaactaaag cgctgggcgg gaccggatcg cagggacagt gcacgcaggt
      241 gcgagtggaa tttatggatg acaccagccg ctctatcatc cgaaacgtca aaggccctgt
      301 tctagagagt gatgtgctca ccctgttgga gtcagaaaga gaagctcgga ggttgtgctg
      361 accttgctgc tgggttctgg atatccactc cttagcccat ggaatgacct gcaactgtta
      421 aataaagcat ttgtattcaa aaaaaaaaaa a
//
