LOCUS       XM_039091224            1839 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus endogenous retrovirus group K member
            19 Env polyprotein-like (LOC108353403), mRNA.
ACCESSION   XM_039091224
VERSION     XM_039091224.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091224.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1839
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1839
                     /gene="LOC108353403"
                     /note="endogenous retrovirus group K member 19 Env
                     polyprotein-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:108353403"
                     /db_xref="RGD:11474113"
     CDS             16..1824
                     /gene="LOC108353403"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:640..642,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: endogenous retrovirus group
                     K member 25 Env polyprotein-like"
                     /protein_id="XP_038947152.1"
                     /db_xref="GeneID:108353403"
                     /db_xref="RGD:11474113"
                     /translation="MLVFSHRIQNHQFGSQTDSSGQPKETDIRPPRRKRPNRRIMQNL
                     AKKIKATRLEPKIKPRQTPTWTQLKTLTAQTKKVLKATHAPETTTLLFVAVLTVMSAP
                     TALRESYWAYLPKPPILHPVGWEVSDHIKVLTNQTLVIGGSPDFHLLKNSSGYVDFEG
                     KSDSLPICFSFSPSVPVGCFQVGKRVFNTDTPTLDNTKPDGKDNGRHMXKLWMTTVSD
                     KEEKRQHYTTTKNLPPHYPHYRATFKKDALWEGDENAFPRWLPCAFPDNGVRFSPLGA
                     AGLLWDFSMSSPDKDQNNYLSTNSKLYGNYVPPVEKPIKRWYDAGWVEPTWFWEPFHT
                     DLPDRQNKPLIEHPELFRLVASSEKLLLKKPGAADYDDVSVSACVTYPYTILVGLPQL
                     INIDKVESIFSIKCTSYKLTNYIDSTVSGSVILIVKRPPYVLLPVDLGDEPWFDDSAI
                     QTIRYATGLIRTKRFVTVLILGITALIAIVTSFAVSTTALVKKIQTATFVNDLHKNVT
                     LTLSEQKIIDLKLETRLNALEEVVLELRRDVTNIKTRMATRCHANYDFICVTPLSYNA
                     TEEWERTKTHLLDIRDDDNISYNIQKLTSLITEMSK"
ORIGIN      
        1 cctctggacg aggctatgct tgtgttttcc cacagaatac agaatcacca atttgggtcc
       61 cagacagact catcaggcca gccaaaggaa acggacatcc gtcccccacg ccgaaagagg
      121 ccgaaccgcc ggataatgca gaacttggcc aaaaagatca aggcgactcg cctagagcca
      181 aaaataaaac cacgccagac gccgacgtgg acacaactta aaaccctgac agctcagaca
      241 aagaaagtat tgaaggctac acatgccccg gaaacgacaa ccttgctgtt tgtggctgta
      301 cttacagtca tgagtgcgcc caccgcttta agagaaagtt attgggctta cttaccaaag
      361 ccacccatat tacatcctgt agggtgggag gtgtcggatc acatcaaggt tttaaccaat
      421 caaacattag tgataggggg atcgcctgac tttcaccttc taaaaaacag ctcgggttat
      481 gtagattttg agggaaagtc cgattctctg cccatttgct tctctttctc cccttcagtg
      541 ccagtgggct gttttcaagt gggaaaaagg gtgtttaaca cagatacccc caccttagac
      601 aataccaaac cagatggaaa ggacaatggg cggcatatgt gaaaattgtg gatgaccacc
      661 gtgagcgata aagaagaaaa aagacaacat tataccacaa caaagaatct tccgccacac
      721 tacccccatt acagagcaac atttaaaaag gacgcccttt gggagggaga tgagaatgct
      781 ttcccgcgct ggcttccatg tgccttccct gacaatgggg taagattctc tcccttaggc
      841 gctgctggac ttctctggga cttctccatg tcctcacctg ataaagatca gaacaattat
      901 ctctccacca actcaaaact ttatgggaac tacgtgcctc cagttgaaaa accgatcaaa
      961 agatggtatg atgcggggtg ggtagaaccg acatggttct gggagccatt ccacacggac
     1021 ctccctgata gacagaacaa accactgata gaacatccag aattgttccg actggttgct
     1081 tctagtgaga aacttttgct gaagaaacca ggagctgctg attatgatga tgtttcagtt
     1141 tctgcttgtg ttacctatcc ctatacaata ttagtaggat tgccacaatt gattaacata
     1201 gataaggttg aatctatttt tagtattaag tgtacatcat acaagctgac taattacatt
     1261 gattccactg tatcgggatc tgttatattg attgtcaaga gacctcctta tgttttgtta
     1321 ccagtagact tgggagatga gccatggttt gatgattctg ccatccagac tattaggtat
     1381 gctacgggtt tgattaggac aaaaagattt gtaacagtct taattctagg tataaccgct
     1441 ttgatagcta ttgttacttc ttttgctgtt tctactactg ctttggttaa gaaaatacag
     1501 actgccactt ttgttaatga tctccataag aatgttaccc ttacattatc agaacagaag
     1561 attatagatt tgaaattaga aactagatta aatgccctag aagaggtagt attagaatta
     1621 agacgagatg ttacaaacat taagactagg atggccacac gctgtcacgc taattatgat
     1681 tttatttgtg tgactccttt atcttataat gctacagaag aatgggaaag gaccaaaaca
     1741 catttgctag acataaggga tgatgataac atttcttata atattcaaaa attgacgtcc
     1801 ttaatcacag aaatgagtaa gtaaaatata gatacagtg
//
