LOCUS       XM_039100147            2367 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus suprabasin-like (LOC108353266), mRNA.
ACCESSION   XM_039100147
VERSION     XM_039100147.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086039) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 100% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2367
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2367
                     /gene="LOC108353266"
                     /note="suprabasin-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 Proteins"
                     /db_xref="GeneID:108353266"
                     /db_xref="RGD:11400519"
     CDS             1..2367
                     /gene="LOC108353266"
                     /codon_start=1
                     /product="collagen alpha-2(I) chain-like"
                     /protein_id="XP_038956075.1"
                     /db_xref="GeneID:108353266"
                     /db_xref="RGD:11400519"
                     /translation="MRPTGSWGRVSIERRTGREAYGLLGQGGHRAADGARGLPVPGEG
                     WASSGGRARGLPVPGEGWASSGGRARGLPVPGAGWASSGGRARGLPVPGEGWASSGGR
                     ARGLPAPGAGWASSGGRSARPTGSWGRVGIERRTGARPTGSWGGVGIERRTGREAYGL
                     LGRGGHRAADGREAYRFLGKGGHRAADGREAYRFLGRGGHRAADGREAYRLLGRGGHR
                     AADGARGLPVPGAGWASSGGRGARPTGSWGRVGIERRTGARPTGSWGRVGIERRTGAR
                     PTGSWGRVGIERRTEREAYRFLGKGGHRAADGARGLPVPGEGWASSGGRSARPTGSWG
                     RVGIERRTGARPTGSWGRVGIERRTGARPTGSWGGVGIERRTEREAYRFLGKGGHRAA
                     DGREAYRLLGRGGHRAADGARGLPVPGEGWASSGGRARGLPAPGAGWASSGGRGARPT
                     GSWVGVGIERRTGREAYRFLGKGGHRAADGARGLPVPGAGWASSGGRGARPTGSWGRV
                     GIERRTGARPTGSWGGVGIERRTGREAYRFLGKGGHRAADGREAYRFLGRGGHRAADG
                     REAYRLLGRGGHRAADGARGLPVPGAGWASSGGRGARPTGSWGRVGIERRTGARPTGS
                     WGGVGIERQTGREAYGLLGRGGHRAADGARGLPVPGEGWASSGGRGARPTGSWGGVGI
                     ERRTGREAYGLLGRGGHRAADGARGLPVPGEGWASSGGRGARPTGSWGRVGIERRTGA
                     RPTGSWGGVGIERLTGREAYRLQGRGGRRAADGARGLRAPGAGWASSG"
ORIGIN      
        1 atgaggccta cgggctcttg gggaagggtg agtatcgagc ggcggacggg gcgcgaggcc
       61 tatgggctcc tggggcaggg tggacatcga gcggcagacg gggcgcgagg cctaccggtt
      121 cctggggaag ggtgggcatc gagcggcgga cgggcgcgag gcctaccggt tcctggggaa
      181 gggtgggcat cgagcggcgg acgggcgcga ggcctaccgg ttcctggggc ggggtgggca
      241 tcgagcggcg gacgggcgcg aggcctaccg gttcctgggg aagggtgggc atcgagcggc
      301 ggacgggcgc gaggcctacc ggctcctggg gcggggtggg catcgagcgg cggacggagc
      361 gcgaggccta ccggttcctg gggaagggtg ggcatcgagc ggcggacggg cgcgaggcct
      421 accggctcct ggggcggggt gggcatcgag cggcggacgg ggcgcgaggc ctacgggctc
      481 ctgggtcggg gtgggcatcg agcggcggac gggcgcgagg cctaccggtt cctggggaag
      541 ggtgggcatc gagcggcgga cgggcgcgag gcctaccggt tcctggggcg gggtggacat
      601 cgagcggcgg acgggcgcga ggcctaccgg ctcctggggc ggggtgggca tcgagcggcg
      661 gacggggcgc gaggcctacc ggttcctggg gcggggtggg catcgagcgg cggacggggc
      721 gcgaggccta ccggttcctg gggaagggtg ggcatcgagc ggcggacggg cgcgaggcct
      781 accggttcct ggggaagggt gggcatcgag cggcggacgg gcgcgaggcc taccggctcc
      841 tggggaaggg tgggcatcga gcggcggacg gagcgcgagg cctaccggtt cctggggaag
      901 ggtgggcatc gagcggcgga cggagcgcga ggcctaccgg ttcctgggga agggtgggca
      961 tcgagcggcg gacggagcgc gaggcctacc ggttcctggg gaagggtggg catcgagcgg
     1021 cggacgggcg cgaggcctac cggttcctgg ggaagggtgg gcatcgagcg gcggacgggc
     1081 gcgaggccta ccggctcctg gggcggggtg ggcatcgagc ggcggacgga gcgcgaggcc
     1141 taccggttcc tggggaaggg tgggcatcga gcggcggacg ggcgcgaggc ctaccggctc
     1201 ctggggcggg gtgggcatcg agcggcggac ggagcgcgag gcctaccggt tcctggggaa
     1261 gggtgggcat cgagcggcgg acgggcgcga ggcctaccgg ctcctggggc ggggtgggca
     1321 tcgagcggcg gacggggcgc gaggcctacg ggctcctggg tcggggtggg catcgagcgg
     1381 cggacggggc gcgaggccta ccggttcctg gggaagggtg ggcatcgagc ggcggacggg
     1441 gcgcgaggcc taccggttcc tggggcgggg tgggcatcga gcggcggacg gggcgcgagg
     1501 cctaccggct cctggggaag ggtgggcatc gagcggcgga cgggcgcgag gcctaccggc
     1561 tcctggggcg gggtgggcat cgagcggcgg acggggcgcg aggcctaccg gttcctgggg
     1621 aagggtgggc atcgagcggc ggacgggcgc gaggcctacc ggttcctggg gcggggtgga
     1681 catcgagcgg cggacgggcg cgaggcctac cggctcctgg ggcggggtgg gcatcgagcg
     1741 gcggacgggg cgcgaggcct accggttcct ggggcggggt gggcatcgag cggcggacgg
     1801 ggcgcgaggc ctaccggttc ctggggaagg gtgggcatcg agcggcggac gggcgcgagg
     1861 cctaccggct cctggggcgg ggtgggcatc gagcggcaga cggggcgcga ggcctacggg
     1921 ctcctgggtc ggggtggaca tcgagcggcg gacggagcgc gaggcctacc ggttcctggg
     1981 gaagggtggg catcgagcgg cggacggggc gcgaggccta ccggctcctg gggcggggtg
     2041 ggcatcgagc ggcggacggg gcgcgaggcc tatgggctcc tgggtcgggg tggacatcga
     2101 gcggcggacg gggcgcgagg cctaccggtt cctggggaag ggtgggcatc gagcggcgga
     2161 cggggcgcga ggcctaccgg ttcctgggga agggtgggca tcgagcggcg gacgggcgcg
     2221 aggcctaccg gctcctgggg cggggtgggc atcgagcggc tgacggggcg cgaggcctac
     2281 aggctccagg ggcggggtgg gcgtcgagcg gctgacgggg cgcgaggcct acgggctcca
     2341 ggggcggggt gggcatcgag cggctga
//
