LOCUS       XM_039097338            1490 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus glyceraldehyde-3-phosphate
            dehydrogenase pseudogene (LOC108353179), mRNA.
ACCESSION   XM_039097338
VERSION     XM_039097338.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051353.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039097338.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1490
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="18"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1490
                     /gene="LOC108353179"
                     /note="glyceraldehyde-3-phosphate dehydrogenase
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108353179"
                     /db_xref="RGD:11390513"
     CDS             281..967
                     /gene="LOC108353179"
                     /codon_start=1
                     /product="glyceraldehyde-3-phosphate dehydrogenase-like"
                     /protein_id="XP_038953266.1"
                     /db_xref="GeneID:108353179"
                     /db_xref="RGD:11390513"
                     /translation="MEKAGAHLKGEVKRVIISAPSADVPIFLMGVNHKKYDNSLKIVS
                     NASCTTNCLAPLAKVIHDNFGIVEGLMTTVHDITTILKTVDGPSGKLWHDGRGAAQNI
                     IPASNGAAKAVGKVIPELNKKLTGMAFCVPTHNVSTVDLTCQLEKPAKSDDIKKVVRQ
                     ASGDPLKGILGYTDDQVVSCNFNSNSDFSTFDAGAGIALNDNFVKLISWYNKEYGYSN
                     RMMDLMACNE"
ORIGIN      
        1 ttggccgaat aggatgcctg gttaccaggg ctgccttctc ttcatctgac aaagtggaca
       61 ttgttgccat caacgacccc ttcattgacc tcaactacat ggtctacatg ttccatgatt
      121 ccacccattg gcaatttcaa tggcacagtc aagactgaga atgggaagct tgtcatcaac
      181 gggtgcttgt catcaccatc tccaggagtg agatcccgct aacatcaaat ggggtgatgc
      241 cggtgctgag tttgttgtgg agtctactga cttcaccacc atggagaagg ctggggctca
      301 cctgaagggt gaggtcaaaa gggtcatcat ctctgcccct tcagctgatg tccctatatt
      361 tttgatgggt gtgaaccaca agaaatatga caactccctc aagattgtca gcaatgcatc
      421 ctgcaccacc aactgcttag cacccctggc caaggtcatc catgacaact ttggcatcgt
      481 ggaagggctc atgaccactg tccatgacat cactaccatt ttgaagactg tagatggccc
      541 ctctggaaag ctgtggcatg atggccgtgg ggcagcccag aacattatcc ctgcatccaa
      601 tggtgctgcc aaggctgtgg gcaaggtcat cccagagctg aacaagaagc tcactggcat
      661 ggccttctgt gttcctaccc acaatgtatc cactgtagat ctgacatgcc aactggagaa
      721 acctgccaag tctgatgaca tcaagaaagt ggtgaggcag gcatctgggg acccactaaa
      781 gggcatcctg ggctacactg atgaccaggt tgtctcctgc aactttaaca gcaactctga
      841 cttttccacc tttgatgctg gagctggcat tgctctcaat gacaactttg taaagctcat
      901 ttcctggtat aacaaagagt atggctacag caacaggatg atggacctca tggcctgcaa
      961 cgagtaagaa accctggacc acccatccag caaggatgct gagagcaaga gagaggccct
     1021 cagttgctga ggagtccccg tcccaactca ggccctaaca ctgagcatct ccctcacaat
     1081 ttccatctca gaccctccat aataacagga ggggcctagg gacccttccc tactctcttg
     1141 aataccatca ctaaaacttg ctgcaccaca aacaggaaag aaaaaggagc atcaaaggct
     1201 agtcagtcta caacacaaaa gccttcaact aaccgttctt aacttgctta tgttatccca
     1261 caaatgatct cagagagtct tatgtcttca acttcaggac tcttggttct tctacattgc
     1321 tatccacaca tatcctgtgc cttatacatc aagagttctg ggcagcagcc agagaactcc
     1381 tttagtgtgt ttcctctact cctgtgaaat gcaggtggtg aatgaagaaa acccagaaat
     1441 gggcctttgg ccaattctca ccagttagtt gctcaatcac tttgaaccaa
//
