LOCUS       XM_039106111            1346 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Y-linked testis-specific protein
            1-like (LOC108353098), transcript variant X3, mRNA.
ACCESSION   XM_039106111
VERSION     XM_039106111.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106111.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1346
                     /gene="LOC108353098"
                     /note="Y-linked testis-specific protein 1-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 45 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:108353098"
                     /db_xref="RGD:11387844"
     CDS             278..994
                     /gene="LOC108353098"
                     /codon_start=1
                     /product="Y-linked testis-specific protein 1-like"
                     /protein_id="XP_038962039.1"
                     /db_xref="GeneID:108353098"
                     /db_xref="RGD:11387844"
                     /translation="MSLRRMSTPSNQKRRRRRPSPQALGNIVGCRISHGWKEGDEPIT
                     QWTAIVLDQLPTNPSLYLVKYDGIDCVYGLELHSDERILKLKVLPHKVVPHKVFPHVK
                     DAHLARAVVGRAVEHKFEGKHGSKDNWRGVVLAQVPIMKDWFYITYEKDPALYIHQLL
                     DDYTEGNLRIIPEIPPAEVKSDVDSDILTGQCVQFTRGDGSKKIGKVIYQVPGKPSVY
                     LIKFDGNVHIYVYTLVEKIC"
ORIGIN      
        1 ttgggggcac tagactccgc tgaaggtggg ttcactatct tcgcagcggg gtgtgaaagc
       61 cagttcagct cctgaacccc acaattgctc aacagccttt tggtgcctga ccggtttccg
      121 aagacagaat ctggacgact aggacatttt ctctcggtga gctcttcaaa cccaggccac
      181 gggcaagtat gaagcctgaa cacagaacga tagccacaag acagtggacc aggataccgt
      241 ggcctaccac actaggtcta cagccaagaa gaagaggatg tctctgagga ggatgagcac
      301 accatccaac cagaagcgga ggaggaggag gccttctccc caggccctgg ggaacattgt
      361 gggctgcaga atttctcacg gatggaagga aggtgatgag cccatcaccc aatggacggc
      421 catcgttcta gatcaactgc caacaaatcc ctctctctat ctggtcaagt atgacggaat
      481 tgactgtgtc tacggactgg aacttcacag cgatgagagg attttaaagc ttaaggtctt
      541 gcctcacaaa gtagtgcctc acaaagtctt tcctcacgtg aaagacgccc atctcgcaag
      601 agccgtggtt ggccgagctg tggagcataa atttgagggc aaacatggct ctaaggacaa
      661 ctggaggggg gtggtcctag cccaggtgcc gatcatgaaa gactggtttt acatcacata
      721 cgagaaagat ccagcccttt acatccacca gctcctggat gattacacag aaggtaacct
      781 ccgtatcatt ccagagattc ctccagcaga ggtgaagtca gacgttgaca gcgacatctt
      841 aacaggtcaa tgtgtgcagt tcaccagagg cgacgggtcc aaaaagatcg gcaaagtcat
      901 ttaccaagtt ccaggcaagc cttccgtgta cttgatcaag tttgatggca acgtccacat
      961 ctacgtttat actctggtgg aaaagatctg ttaaggtgaa attcacaaag tagggggaca
     1021 tagatgggga atttatagga ttggggggaa aatgttttta tgtgttttag ataaacaagg
     1081 gcctttgaca accccagtat cttttccagt ggaatttgtt tttgctctaa aattaaaatg
     1141 tgcgatgtga cgtgttgtat gtgcacactt tggtggagga gacgggctgt ggtgcatgga
     1201 acatggagag gaagccggaa aggtcaaggc tgtgaacagt aagtctgatg tcacatagac
     1261 taaaacaaac aggactgagc tggtctggtc tttagggaga gaaaagaact ggagatgagg
     1321 cttagaggag cagggatggc acgggg
//
