LOCUS       XM_039094025             380 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S29 pseudogene
            (LOC108353033), mRNA.
ACCESSION   XM_039094025
VERSION     XM_039094025.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039094025.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..380
                     /gene="LOC108353033"
                     /note="40S ribosomal protein S29 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 long SRA read, 10 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108353033"
                     /db_xref="RGD:11412987"
     CDS             107..277
                     /gene="LOC108353033"
                     /codon_start=1
                     /product="40S ribosomal protein S29-like"
                     /protein_id="XP_038949953.1"
                     /db_xref="GeneID:108353033"
                     /db_xref="RGD:11412987"
                     /translation="MGHQQLYCSHPRKFGQGSRSCCVCSNRHGLIRKYGLNMCQQCFR
                     QYAKDIGFIKLD"
ORIGIN      
        1 ctccgaaaaa aagaaccaaa aaaaaaaaaa aaagtgacaa gaactttgaa gagctcatgc
       61 gtgcgccagc tcgttccttt ttcctctttg ggcgtctgaa ggtaagatgg gtcaccagca
      121 gctctactgt agtcacccga ggaagttcgg ccagggttct cgctcttgct gcgtctgctc
      181 taaccgccat ggtctgatcc gtaaatacgg gctgaacatg tgccaacagt gcttccgtca
      241 gtacgcgaag gacataggct tcattaagtt ggactaagcg acctgagtgg atgattcaac
      301 tgtctaccca gtgaaactga ctatctaccc tgtgatacca atcatgctag tctttgtgca
      361 cacagaataa aaaaactgaa
//
