LOCUS       XM_039093977            2996 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus endogenous retrovirus group K member
            21 Env polyprotein-like (LOC108352965), mRNA.
ACCESSION   XM_039093977
VERSION     XM_039093977.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1279              JACYVU010000272.1  41056351-41057629
            1280-1913           JACYVU010000272.1  41062564-41063197
            1914-2620           JACYVU010000272.1  41063199-41063905
            2621-2996           JACYVU010000272.1  41064520-41064895
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2996
                     /gene="LOC108352965"
                     /note="endogenous retrovirus group K member 21 Env
                     polyprotein-like; The sequence of the model RefSeq
                     transcript was modified relative to its source genomic
                     sequence to represent the inferred CDS: deleted 1 base in
                     1 codon; Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 52 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:108352965"
                     /db_xref="RGD:11489075"
     CDS             1281..2672
                     /gene="LOC108352965"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: endogenous retrovirus group
                     K member 19 Env polyprotein-like"
                     /protein_id="XP_038949905.1"
                     /db_xref="GeneID:108352965"
                     /db_xref="RGD:11489075"
                     /translation="MPNHQFGSQTDSSGQPKETDIRPPRRKRPNRPIMRNLAKKIKAT
                     RLEPKIKPRQTPTWTQLKTLTAQAKKVLKAAHAPETATLLFVAMLAVMSAPTALGESY
                     WAYLPKPPILHPVGWEVSDHIKVLTNQTLVIGGSPDIHLLKNSSGYVDFEGKSDSLPI
                     CFSFSPSVPVGCFQVGKRVFNTDTPTLDNTKPDGKGNGRRMWELWMTNVSDKKKKRQH
                     YTTAKNLPPRYPHCRAAFKKDALWEGDENAFPRWLPCAFPDNGVRFSPLGAAGLLWDF
                     SMSSPDKDQNNYLSTNSKLYGNYVPPVGKPIKRWYDAGWVEPTWFWEPLHTDLPDRQN
                     KPLIEHPELFRLVASSEKLLLKKPGAADYDAVSVSACVTYPYAILVGLPQLINIDKVE
                     SIFSIKCTSCKLTNCIDSTVSGSVILIVRRPPYVLLPVDLEDEPWFDDSAIQTIRFHC
                     PGSSRSQFGAFKK"
ORIGIN      
        1 ccaagaagat gtgcagctgg acttgccccc tgctgcaaac ttggctctgg gctgatgggc
       61 atctgggtca tgggaaagat cgttgtcagc acttatttct ttattttttc tttgtttgat
      121 tctgaatatg atcttggcaa gacagagact tcctttaata ataggacaga aggtcgtgat
      181 ctatttttga tcactaatac cacaagcttt cctgcttcct ctttacagca gacagagcct
      241 ctgatgacag ggactccaag gttgcagatt atgtcttctc ttatagataa ggaaatataa
      301 gatttaacaa agaattatac ttataaggct cgtgatgctt cttctattag ggtgttggta
      361 gaactgttga gaaatgattc cttgagcttt gggtcggcta tgaatatttt acagagtata
      421 gaaacaggtg gtggcaacca ggtacttaca ggggaccata tgtgcatcga ccaacggatg
      481 ctccattacc atatactgga gaatatgatt tgaattttga taggtgggtt actaaggatg
      541 gatatagggt caggtatttg tcactgcctt ggtcagaaag attgacaaga gcccgtcctc
      601 cttggtgtgt gctctcagaa gaagagaaat gggaggtaag gtcacagatc atcagatact
      661 ttagacaggg atcaggcata caatattatt gccccaagcc ttggatgtac atctacagga
      721 ctaacaaaga tgggatcaaa gggttaacta gagcgataga actaggtgca cagacctgat
      781 ggcgtaaaat atgccagact tgcggtcccc tgaaacttcc tccttgatgt gacaaacgga
      841 aaactagact aggctggctg actgcggctc gtctgaaaaa aaaaaaagca agctatacct
      901 ttttgcagaa aaatcaaatg ttcttggcca tggtccaaga ttgttatgca atgaaaattg
      961 tgtataaatg tctgatgctc tctcagtaaa gttgcaacag ctgaccacac tctctctgtg
     1021 tctgtgtctc tgttcgccat cctgtctccg ctccacgcat gtcctcaaca ggggtccccc
     1081 agccgatcct tggaacctcc aagattgccg accacggcag ctggcgcccg aacagggact
     1141 tgaaccctgg acacgtgcat gctgttgtct tcttgtgttt ttcctgtttg tcttttatcc
     1201 tcttgcttta gaactgcaat cactacagga gcggaacgga ctcaccgaag ggaactacag
     1261 tcccgcctac ggagaagaga atgccgaatc accaatttgg gtcccagaca gactcatcag
     1321 gccagccaaa ggaaacggac atccgtcccc cacgccgaaa gaggccgaac cgcccgataa
     1381 tgcggaacct ggccaaaaag atcaaggcga ctcgcctaga gccaaaaata aaaccacgcc
     1441 agacgccgac gtggacacaa cttaaaaccc tgacagctca ggcaaagaaa gtattgaagg
     1501 ctgcacatgc cccggaaacg gcaaccttgc tgtttgtggc tatgcttgca gtcatgagtg
     1561 cgcccaccgc tttaggggaa agttattggg cttacttacc aaagccaccc atattacatc
     1621 ctgtagggtg ggaggtgtcg gatcacatca aggttttaac caatcaaaca ttagtaatag
     1681 ggggatcgcc tgacattcac cttctaaaga acagctcggg ttatgtagat tttgagggaa
     1741 agtccgattc tctgcccatt tgcttctctt tctccccttc agtgccagtg ggctgttttc
     1801 aagtgggaaa aagggtgttt aacacagata cccccacctt ggacaatacc aaaccagatg
     1861 gaaagggcaa cgggcggcgt atgtgggaat tgtggatgac caacgtgagc gataagaaga
     1921 aaaaaagaca acattatacc acagcaaaga atcttccgcc gcgctacccc cattgcagag
     1981 cagcatttaa aaaggacgcc ctttgggagg gagatgagaa tgctttcccg cgctggcttc
     2041 catgtgcctt ccctgacaat ggggtaagat tctctccctt aggcgctgct ggacttctct
     2101 gggacttctc catgtcctca cctgataaag atcagaacaa ttatctctcc accaactcaa
     2161 aactttatgg gaactacgtg cctccagttg gaaaaccgat caaaagatgg tatgatgcgg
     2221 ggtgggtaga accgacatgg ttctgggagc cactccacac ggacctccct gatagacaga
     2281 acaaaccact gatagaacat ccagaactgt tccgactggt tgcttctagt gagaaacttt
     2341 tgctgaagaa accaggagct gctgattatg atgctgtttc agtttctgct tgtgttacct
     2401 atccctatgc aatattagta ggattgccac aattgattaa catagataag gttgaatcta
     2461 tttttagtat taagtgtaca tcatgcaagc tgactaattg cattgattcc actgtatcgg
     2521 gatctgttat attgattgtc aggagacctc cttatgtttt gttaccagta gacttggaag
     2581 atgagccatg gtttgatgat tctgccatcc agactattag attccattgc ccaggttcaa
     2641 gcagatctca atttggtgct tttaaaaaat aaaaaaggag gaactgccgc gcctacagca
     2701 gaaataaccg agctccgggg cagacatgac gcctgagtgg gagccggttc gagggttcgc
     2761 accacacgtg gttaagcccc ctgcttacat gcggcggact ccaagaagat gtacacctgg
     2821 acttccccct gctgcaaact tggctctggg ctgatgggca tctgggtcat gggaaagatc
     2881 gttgtcagca cttatttctt tattttttct ttgtttgatt ctgaatatga tcttggcaag
     2941 acagagactt cctttaataa taggacagaa ggtcgtgatc tatttttgat cactaa
//
