LOCUS       XM_039093966            2624 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC108352954
            (LOC108352954), transcript variant X2, mRNA.
ACCESSION   XM_039093966
VERSION     XM_039093966.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093966.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2624
                     /gene="LOC108352954"
                     /note="uncharacterized LOC108352954; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     Proteins, and 92% coverage of the annotated genomic
                     feature by RNAseq alignments, including 3 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:108352954"
                     /db_xref="RGD:11498208"
     CDS             1743..2624
                     /gene="LOC108352954"
                     /codon_start=1
                     /product="glyceraldehyde-3-phosphate dehydrogenase-like"
                     /protein_id="XP_038949894.1"
                     /db_xref="GeneID:108352954"
                     /db_xref="RGD:11498208"
                     /translation="MVYMFQYDSTHDKFNGTVKAGNEKLVINGKPITIFQERDPANIK
                     WGDAGAEYVMESTGIFTTVEKAGAHLKGGAKRVIISAPSVDAPMFVMGVNHRKYDNFL
                     KIVRNASCTTNCLAPLTKVIHDNFVILEGLMTTVHAITATQKTVNGSSGKLWCDGCGA
                     AQNIIPASTGAAKAVGKVISELNGKLTGMGFRVPTPNVSIVDLTCRLEKPAKYDDIKM
                     VMKQVSEGPLKGILGYTEDKVVSCDFKSNSHSSTFDAGAGIALNDKFVKLISWYDNEY
                     GYSNRVVDLMAYMVSKE"
ORIGIN      
        1 actagatgat gtgaggccct gaacacatac acagcagagg actgccagtt ctgggtttag
       61 tcagagaaga ggcatctaat cctcaagaga ctggaagtcc cagggtgtag ggaggtgtag
      121 tgggggtgac ctcttgtgtg taagtgttgt ttcctgtggt tgggcagggc tctgtggcca
      181 atgggatgtg aatgaagcta gcatgtacta tttccaaagc caaatgtaaa acatttggtc
      241 agttggtgca aacatgccag ttgtcttgct gttgcccata cagggaagct ctgaaagtgt
      301 aaaatgtaaa ccatgcaagt gaacaaaggg gattttggac agcctgagta cgtggatgac
      361 tatttattag ttatgtcttt caagtaaccc aatcattgca cattggagat aaaggtatgt
      421 atcataaaca tgtgctccat ctagcctaac caatatagaa attagttaaa cgagctgagt
      481 gcttctgtag cagaaagcga aaataggtca aataggcatg gcatgcacgt caacagcaat
      541 ggacgcatca gaagctatga ttaagaggcc ttacattgaa acagtgacca agctatgtca
      601 ttggtggagc agataatatt cctattgcaa agcaagtcta ggacagtggc tttgagatgg
      661 gcaagttggg gccctctggg gctgtcagaa attttaaagg taataatcaa tccttcaaga
      721 gaaagaatgt tgtattccaa atactgcttg tattgtgccc gaaacactct ggtcttgagg
      781 aagacacatt cactatgctt gagattgcag aatcaagagg agaagctggg caatttgaaa
      841 gcaaaaaagc agagaataaa atactgctgt catccagctt tttcaatatt ggaaggttgt
      901 tggtattaca ttttcaaaaa ggaagacaga aaactgaaaa gactccataa aaactaagac
      961 ttttgccaaa gggtcagtca gtaagtttgg ctgacatatc tgtggctgat acttctgaac
     1021 gaacacaaaa taagccacag gtgaatgacc taccttgaga cacagcaccc agtcagactt
     1081 gaggatagag aaagaagcaa agcagacagt taaaaaagaa acggcattac ttttcctcac
     1141 aaaactatta tctattaaaa gaaaaaggaa agacaagtac agtaaacttg taaagtttct
     1201 caaaaggtgc tagactatat cttcagaaat ttggaaatga ctgagctaaa aatagattgg
     1261 ctaataaact tttaaaaatc tgtagtttca cagtggacaa aatctgggtg tctttcctga
     1321 aaaaacctat gcttaatggg atacttaaaa caagacttgg gtttccaaaa cttgaacaag
     1381 aaagaagcag actgaaaagc tgtctggttt caaggtgagc aacggtgacc ttcttggttg
     1441 tccaggatga ctaaaagcaa aggacatggg aagatgaaga caacatgtca tgacttaaac
     1501 cacagaaaat acacctcatc tctgtcagtt gtaagggatg tcatcactct gagggactga
     1561 gttcagagct ctgaagtaac tgactccagg gatcatgcgg gtgaaagaag gtggtatcat
     1621 gaggaggagc tcaccaaagt tcttataagc agctttgaaa aagacagttt taagaatacc
     1681 agctcagatc tggcaaagtg gacattgttg ccatcaacga ccccttcatt gacctcaact
     1741 acatggtcta catgttccag tatgactcta cccatgacaa gttcaacggc acagtcaagg
     1801 ctgggaatga gaaacttgtc atcaatggga agcccatcac catcttccag gagcgagatc
     1861 ccgctaacat caaatggggt gatgctggtg ctgagtatgt catggagtct actggcatct
     1921 tcaccaccgt ggagaaggct ggggctcact tgaagggtgg agccaaaagg gtcatcatct
     1981 ctgccccctc agttgatgcc cccatgtttg tgatgggtgt gaaccacagg aaatatgaca
     2041 acttcctcaa gattgtcaga aatgcatcct gcaccaccaa ctgcttagcc cccctgacca
     2101 aggtcatcca tgacaacttt gtcatcctgg aagggctcat gactacagtc catgccatca
     2161 ctgccactca gaagactgtg aatggctcct ctggaaagct gtggtgtgat ggctgtgggg
     2221 cagcccagaa catcatccct gcatccactg gtgctgccaa ggctgtgggc aaggtcatct
     2281 cagagctgaa cgggaagctc actggcatgg gcttccgtgt tcctaccccc aatgtatcca
     2341 ttgtggatct gacatgccgc ctggagaaac ctgccaagta tgatgacatc aagatggtaa
     2401 tgaagcaggt gtccgagggc ccactaaagg gcatcctggg ctacactgag gacaaggttg
     2461 tctcctgcga cttcaagagc aactcccact cttccacctt tgatgctgga gctggcattg
     2521 ctctcaatga caaatttgta aagctcattt cttggtatga caatgaatat ggctacagca
     2581 acagggtggt ggacctcatg gcttacatgg tttccaagga gtaa
//
