LOCUS       XM_039092906            1185 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S19 pseudogene
            (LOC108352823), mRNA.
ACCESSION   XM_039092906
VERSION     XM_039092906.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 38% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1185
                     /gene="LOC108352823"
                     /note="40S ribosomal protein S19 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 6 Proteins, and 62% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108352823"
                     /db_xref="RGD:11423634"
     CDS             1..1140
                     /gene="LOC108352823"
                     /codon_start=1
                     /product="uncharacterized protein LOC108352823"
                     /protein_id="XP_038948834.1"
                     /db_xref="GeneID:108352823"
                     /db_xref="RGD:11423634"
                     /translation="MAGAPAGGTDGLYSEQRECEERVFSLPRSHAAPLTASVRYRQEE
                     LREKSPLGRTSFQCGFQGSEVQSSMIKHGIMEHGLQAGMEMKKEKGSYIWIGREQEKS
                     QWAWLEDPKPQNPPAGTHFLLQGHTYYSNKTTPPQSATSRAVSAGEWSLSHEYSGGES
                     YSGYFFYTHCQHTHWATTFHYIFLLSLTLSPHQQRAVILKSTHSGILLLSTFSSVSWL
                     VLGVLIWNYIKEKRQAKLDAQLVRLGNLVVPFPLAGSTEAARCLELLYQQEFVRALAA
                     FLKKSGKLKVPEWVDTVKLAKHKELAPYEENWFYTRAASTARHRVRPSHFSRGSKSAA
                     CRVLQALEGLKMVEKDQDGGRKLIPQGQRDLDRIARQVAAANKKH"
ORIGIN      
        1 atggccggcg ctccagctgg gggcacagat ggtctgtatt cagagcagcg cgagtgtgaa
       61 gaaagggttt tttcccttcc tcggtcccac gccgcacctc tcacagcctc tgtccgctat
      121 cgccaagagg aactgagaga aaagagtccc ttaggcagga cgtccttcca atgtgggttt
      181 caaggttcag aggttcagtc cagtatgatc aagcacggca tcatggagca cggcctccag
      241 gcaggcatgg agatgaagaa agagaagggg tcctacatct ggattggtag ggagcaggaa
      301 aagagccagt gggcctggct tgaggatccg aaaccacaaa acccacctgc agggacacat
      361 ttccttttac aaggccacac ctattattcg aacaagacca cacctcctca gagtgccact
      421 tccagagcag tctctgcagg ggagtggtcc ttaagtcatg aatattcagg gggagaaagc
      481 tatagtggat attttttcta cacacactgc caacacacac actgggcaac tacctttcac
      541 tatatattcc tgctaagcct gacgctaagt ccacatcagc agcgcgcagt cattctgaaa
      601 tccactcact caggaatcct tctgctctcc acatttagta gtgtaagttg gttggtgttg
      661 ggtgtattga tatggaatta tataaaagaa aaaaggcagg cgaaactcga cgcccaactt
      721 gtgcgcctgg gaaacctcgt cgttcccttt cccctggctg gcagcacgga ggccgcacgt
      781 tgtctagagt tactgtacca gcaggagttt gtcagagctc tggcagcctt cctcaaaaag
      841 tctgggaagc tgaaagtccc cgaatgggtg gacacagtca aactggccaa acataaagag
      901 cttgccccat atgaggagaa ctggttctac acacgagctg cttccacagc acggcaccgt
      961 gtcaggccca gccacttcag cagaggctct aagagtgcgg cctgccgggt cctccaagcc
     1021 ctggaggggc tgaaaatggt ggaaaaggac caagatgggg gccgcaagct aatacctcag
     1081 ggacagagag atctggacag gatcgccaga caggtggccg ctgccaacaa gaagcattag
     1141 aacaaaggat gctgggttaa taaattgcct cattcataaa aaaaa
//
