LOCUS       XM_039092905             525 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L29 pseudogene
            (LOC108352822), partial mRNA.
ACCESSION   XM_039092905
VERSION     XM_039092905.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..525
                     /gene="LOC108352822"
                     /note="60S ribosomal protein L29 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 Protein, and 83% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108352822"
                     /db_xref="RGD:11498901"
     CDS             <1..525
                     /gene="LOC108352822"
                     /codon_start=1
                     /product="60S ribosomal protein L29-like"
                     /protein_id="XP_038948833.1"
                     /db_xref="GeneID:108352822"
                     /db_xref="RGD:11498901"
                     /translation="FNIHILALPIPGTAEAAAYRADTAKAKNHTTHNQSHKWYRNGIK
                     KPQSQRYESLKGVDPKFLRNMRFAQKHNKKDLKKMQANNAKAVSARAEAIKALVRIKV
                     IKPKMPKGPGHKLSHHDFISHPKVGKRIQSYMAKGCKLCQPKPKVQTKAEATAPAEAQ
                     ASAPAQAPKGARPV"
ORIGIN      
        1 tttaatatcc atattcttgc tcttccaatc ccaggcactg cagaggcagc ggcttaccgt
       61 gcagacacgg ccaaggccaa gaaccacacc acacacaacc agtcccacaa atggtacaga
      121 aatggcatca agaaacccca gtcacaaaga tatgaatctc ttaagggggt cgaccccaag
      181 ttcctgagga acatgcgctt tgcccagaag cacaacaaga aagatctgaa gaagatgcag
      241 gccaacaatg ccaaggcagt gagtgcacga gcagaggcca tcaaggccct tgtgaggatt
      301 aaggtcatca agcccaagat gccaaagggc cctggccaca aactgagcca tcatgatttc
      361 atctctcatc ccaaggttgg gaagaggatt caaagctaca tggccaaggg ttgtaagctc
      421 tgccaaccaa agcccaaagt tcaaaccaag gcagaggcca cagctccagc tgaggctcag
      481 gcttcagctc cagcccaggc tcccaagggt gccaggcccg tgtga
//
