LOCUS       XM_039092873            2043 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S12 pseudogene
            (LOC108352809), mRNA.
ACCESSION   XM_039092873
VERSION     XM_039092873.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092873.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2043
                     /gene="LOC108352809"
                     /note="40S ribosomal protein S12 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 19 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108352809"
                     /db_xref="RGD:11400929"
     CDS             1597..1995
                     /gene="LOC108352809"
                     /codon_start=1
                     /product="40S ribosomal protein S12-like"
                     /protein_id="XP_038948801.1"
                     /db_xref="GeneID:108352809"
                     /db_xref="RGD:11400929"
                     /translation="MAEESIAVGGVMDINTALQGMLKTALIHDSLARDIREAAKAFDK
                     RQAHVYVLASDCDEPMCVKLVYALCAEHQINLIKADDNKKLGEWGGLCKIDREGKPQK
                     VVVCSCVVVQDYGKESQAKDIIKEYFKCKK"
ORIGIN      
        1 tgcccttgcc atggctgaat cccagcatga aagcaaagag gaagagagaa gtttcaagcc
       61 aaccttttat ggaagacact ggctcttccc caaacctcat cagttatgcc tccatgaaat
      121 cttgttggcc agaagcactt tatagatctg tgttggaaaa caagaggtct gaatagcaga
      181 ttgccgctta cacccaggta ggtcccactt aaaatgagaa gggaaaattc aagtcagata
      241 agatggtgtg cacctgtaat cccaaccctg gagaaactga tcatgagttc gaggccagcc
      301 tggagtactg tgacaccctc cctccaaaac ataaataagt aagtaaataa taaaaaggag
      361 gtttggggat gatgtaacca actgcagaca tgtcagaatg gaagcatcga ataagctaaa
      421 tcaaaaagca gagaacaagt atttactatt caaatgtaat cccacctgaa gcttctgaac
      481 aggcatctaa agaaaaggcc acattccgac agcctaggct gtctttagaa gcttcctgtg
      541 catatagcac ttagcaagtt gcttgcccag agactaccca gaattcctgg gatcagcaga
      601 tacaatataa agtacaggat gttctaaaaa tggtacttgt cataagagct aacatgactg
      661 ccctggccca gggatagaaa gattggtgag cacttgagtg atgagcccca tctataattt
      721 agtgagctcc actcattcac ggactccgac accgcctgac aggggaaaag ggccatctcc
      781 ttccgctcct gttcaagtca ccagagagtt gtggttggcg atgatgggaa gtgttgcaaa
      841 ggagcccggc atttcctgtg ccctaaacgg ctccagcttc cgaacctggg catgctccag
      901 acataaaccc aatgaggcag acaaaagaaa tactaacaat tagtcaggca tgcaaggtcc
      961 agtggaaata gtcattaaag atacgatatg atcatttggt ggttttccag agagctttat
     1021 cacagggtgc tgccagcctt tcagctgctt tccagttgtg cggtgggaca gcaagctgag
     1081 aggcccctcc ctctgactcc agccaagctg agaggcccct ccctctgact ccagtctgga
     1141 gcccttttca atggcacctg ctaatcttgt taaatcttaa atgctttttg gttttatggg
     1201 tccacttgct tttccttcca gccttctttg accttgttgt ctttgtgtgg cttgtatgtg
     1261 tgagggttgt acagttaatt ctagaacaca gcaggatgaa gactatgtat gcgacatatg
     1321 ccatagacaa aaaggtacag aaaaaaaatg atgttgctct tcaaataaga ttaaagatat
     1381 atactgggca tttaagatat gtaatgaatt ttggtcacct gaccgctgtt ttcagaaggg
     1441 gaaaatgaat ttgtcctaaa gtcattttag ctcagtaaaa atgcaccaga cacgagaata
     1501 gaaaatgtat gttacttttc ccctgccgcc gccaagttgc gcagaggcgg aagctctggt
     1561 gcattcaaga ttcagcatca cccataatct accgccatgg ccgaggaaag catagctgtt
     1621 ggaggtgtaa tggacatcaa cactgctcta caagggatgc tgaagaccgc cctcatccat
     1681 gacagcctag cacgtgacat acgcgaagct gccaaagcct ttgacaagcg ccaagcccat
     1741 gtctatgtgc ttgcctccga ctgtgatgaa cccatgtgtg tcaagctggt gtacgcactc
     1801 tgtgctgagc accagatcaa cctgataaag gctgatgaca acaagaaact tggggaatgg
     1861 ggaggcctct gtaaaatcga tcgagagggg aaaccacaga aagtggttgt ttgcagttgt
     1921 gtagtggttc aagattatgg caaagaatct caggccaagg atatcatcaa ggagtacttc
     1981 aaatgcaaga aatgaataaa taaaattttg gcaaaagaaa atgtataagt tagtctagcc
     2041 ata
//
