LOCUS       XM_039092886             453 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S17 pseudogene
            (LOC108352780), mRNA.
ACCESSION   XM_039092886
VERSION     XM_039092886.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 10% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..453
                     /gene="LOC108352780"
                     /note="40S ribosomal protein S17 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 17 Proteins, and 72% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108352780"
                     /db_xref="RGD:11503487"
     CDS             1..453
                     /gene="LOC108352780"
                     /codon_start=1
                     /product="40S ribosomal protein S17-like"
                     /protein_id="XP_038948814.1"
                     /db_xref="GeneID:108352780"
                     /db_xref="RGD:11503487"
                     /translation="MPHYSTVDFRQRPINTGHILMKTVKKAARVIIKKYSMCLGNDFH
                     TNKRMCEEIIIIPSKDLRNKIVGYVTHLMRQTQRGPVRGISIKLQEEERTRRDNYVPE
                     VSVLDQEITKVEPDTKEMLKLLDFGSLSNLQVTQPTVGMNFKTPCGAV"
ORIGIN      
        1 atgccacact attccactgt ggatttccgc caacgaccca tcaacacagg ccacattctc
       61 atgaagactg tgaagaaggc ggcccgggtc atcatcaaga agtactccat gtgcctgggt
      121 aatgacttcc acaccaacaa gcgcatgtgt gaggagatca tcatcatccc cagcaaggac
      181 cttcggaaca agatagtcgg ctatgtcacg catctgatga ggcagactca gagaggtcct
      241 gtgagaggca tctccatcaa gttgcaggaa gaagagagaa cgaggagaga taactatgtt
      301 cctgaggtct cagtcctaga tcaggagatc actaaggtag agcctgacac caaggaaatg
      361 ctgaaacttc tggactttgg cagtctctcc aacctccagg tcactcagcc tacggttggg
      421 atgaatttca aaacaccatg tggagctgtt tag
//
