LOCUS       XM_039091152            1494 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus endogenous retrovirus group K member
            113 Gag polyprotein-like (LOC108352618), mRNA.
ACCESSION   XM_039091152
VERSION     XM_039091152.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091152.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 17% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1494
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1494
                     /gene="LOC108352618"
                     /note="endogenous retrovirus group K member 113 Gag
                     polyprotein-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 48%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:108352618"
                     /db_xref="RGD:11389558"
     CDS             1..1494
                     /gene="LOC108352618"
                     /codon_start=1
                     /product="endogenous retrovirus group K member 113 Gag
                     polyprotein-like"
                     /protein_id="XP_038947080.1"
                     /db_xref="GeneID:108352618"
                     /db_xref="RGD:11389558"
                     /translation="MQQEEQKGCMPYHKCLTRSFTIASWDKLGRDLDRKLAEKDLRLG
                     TKAIWKLVKNCLVDDVCKAAVVGGQTVLEVVQDGMSETERSERLGTCKRKDVLKKKKS
                     PPERKVDNRKLLPRQSPTVPPPYEARSCAFSLVPDRVRRKLRMMFPVFETQEGERVHA
                     PVEYNQIKELAESVRKYGVTANFTLTILERLVLNYLTPADWQMIAKATLVNMGQYMEW
                     KALWYEAAQTQARANPTALTPEQREWTFELLTGQGRFAADQANYHWGAYVQVSSSGIK
                     AWKALTKKGGADNQLTRIIQGPQEPFSDFVARMTETAGRIFGDAEQAAPLIEQLVFEQ
                     ATQECRAAIAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSQPRPLKGTDTRSCFQ
                     CGKMGHLKRDCRITKGDRRPATICVRCGKGYHRPDRCRSVRDIKGKLLPPLEAQPNEM
                     SKNGSLGPQSQGPQRYGNRFQKAMTLTEETPQEVTQNWTCVPPPTSF"
ORIGIN      
        1 atgcagcagg aagagcagaa aggttgcatg ccataccaca agtgcttaac cagatcgttt
       61 acaatcgcct catgggacaa acttggaagg gacctagaca gaaaattggc ggagaaagat
      121 ctgcggctag gaactaaagc catatggaaa ctagtcaaaa attgcttagt agatgacgtg
      181 tgtaaggcag cagtggtagg aggtcagacc gtactcgagg tggtccagga tgggatgtca
      241 gaaactgaac gtagtgagag attaggcacg tgcaagagaa aggacgtcct gaaaaagaaa
      301 aagagccctc ccgaacgaaa ggtagataat agaaagcttc tgccgcggca gtcgccaacc
      361 gtgccccctc cgtatgaggc gcgctcttgt gcattctcct tagtccccga tagggtgaga
      421 aggaagctgc gcatgatgtt cccagtcttt gagacgcagg agggtgagcg ggttcatgcc
      481 ccagtcgaat ataaccaaat aaaagagctg gcggagtctg tcagaaagta cggagttaca
      541 gccaatttca ccctaaccat tcttgaaagg ctggtcctaa attatttgac acccgccgat
      601 tggcagatga ttgcaaaagc gacccttgtg aacatgggcc aatatatgga atggaaggcc
      661 ctttggtatg aggcggctca aacacaggcc agagctaatc ccacggcgtt aacgcctgag
      721 cagcgagaat ggacgtttga actcttgaca ggacagggtc gcttcgcagc agaccaagct
      781 aattaccatt ggggcgctta tgttcaagtc tccagctcgg gcattaaggc ctggaaggca
      841 ctcaccaaga aaggaggggc cgataatcaa cttactcgta tcatccaggg acctcaggaa
      901 ccattctcag actttgtagc cagaatgaca gaaactgcgg gacgaatatt tggcgatgcg
      961 gagcaagcag cacctcttat agaacagctc gttttcgagc aagccaccca ggaatgccgg
     1021 gcagctatag cccccagaaa aaataaagga ttacaggact ggctcagagt ctgcagagag
     1081 ctcggcgggc cccttactaa cgcgggcttg gcggccgcca ttctccagtc ccagccacgc
     1141 ccccttaaag ggacagatac aagatcatgt tttcaatgtg gaaaaatggg ccatttaaaa
     1201 agagactgta ggataaccaa gggagacagg aggcctgcaa ctatctgtgt ccgatgtggc
     1261 aagggctacc ataggcctga ccggtgccgc tcagtgaggg atattaaggg caaactactc
     1321 cctcccttag aagctcagcc taatgagatg tcaaaaaacg gatcgttggg cccccagtcc
     1381 cagggccctc aaagatatgg gaaccgcttt cagaaagcca tgaccctgac agaggagact
     1441 ccccaagagg tgacacaaaa ctggacctgt gtgccgcctc cgacttcttt ctaa
//
