LOCUS       XM_039091407             644 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus H/ACA ribonucleoprotein complex
            subunit 3 pseudogene (LOC108352568), mRNA.
ACCESSION   XM_039091407
VERSION     XM_039091407.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091407.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..644
                     /gene="LOC108352568"
                     /note="H/ACA ribonucleoprotein complex subunit 3
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108352568"
                     /db_xref="RGD:11494075"
     CDS             262..456
                     /gene="LOC108352568"
                     /codon_start=1
                     /product="H/ACA ribonucleoprotein complex subunit 3-like"
                     /protein_id="XP_038947335.1"
                     /db_xref="GeneID:108352568"
                     /db_xref="RGD:11494075"
                     /translation="MFLQYYLNEQGDHVYTLKKFDPMGQQTCSAHPARFSPDDKYSRH
                     RITIKKCFKVLMTQQPRPVL"
ORIGIN      
        1 tctcaacaca gtatttaaag agaacttgtc actcaagtac taaacctaga cagggcggac
       61 atttccaacg agattctaca gagtaatggc gctgcacagg gagacaaaat cctgctgaca
      121 caggagtctc ttcttcgtca ccgggtgaca aagattcaga ccgcaacctc atttcagcat
      181 cagttagaaa aggaaaattg gactttgggc gaatgcggct ggcggtaaac gtacccgcgt
      241 gttttctgct gaggggcagt catgtttctc cagtattacc tcaacgagca gggcgatcac
      301 gtctatactc taaagaaatt tgaccccatg ggacaacaga cttgctctgc ccatcctgct
      361 cgattctccc cagatgacaa atactcaaga caccgaatca ccatcaagaa atgcttcaag
      421 gtgctcatga cccagcaacc aagacctgtc ctctgagggc ttgttaatct cttgtgttac
      481 tcgtcccccg gccgattatc agcaaccaaa cacttcattc cgtgagcctg gaagccttcc
      541 catgctgttt agaatcccct ctcactcact aaagtctgta gtgatgggca tcgcccgtaa
      601 aaggaacgac ttttttccat gttttgattt actgcccggt tttt
//
