LOCUS       XM_039087589            1206 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L35a pseudogene
            (LOC108352176), partial mRNA.
ACCESSION   XM_039087589
VERSION     XM_039087589.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087589.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..1206
                     /gene="LOC108352176"
                     /note="60S ribosomal protein L35a pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 13 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108352176"
                     /db_xref="RGD:11427363"
     CDS             <1..324
                     /gene="LOC108352176"
                     /codon_start=1
                     /product="60S ribosomal protein L35a-like"
                     /protein_id="XP_038943517.1"
                     /db_xref="GeneID:108352176"
                     /db_xref="RGD:11427363"
                     /translation="RLWCKAIFAGYRQGLRNQREHTALLKIEGVYARDETEFYLGKGC
                     AYVYKAKNNAVTPGGKPNKTKVIWGKVTQAHGNSGMVRAKFRSSLPAKAIGHRILVML
                     YPSRI"
ORIGIN      
        1 aggctgtggt gcaaggccat ttttgctggc tacaggcaag gcctccggaa ccaaagagag
       61 cacacggctc ttcttaaaat tgaaggtgtt tatgcccgag atgaaactga gttctactta
      121 ggcaaggggt gtgcttatgt gtacaaagca aaaaacaatg cagtgactcc tggaggcaaa
      181 ccaaacaaaa ccaaagtgat ctggggaaaa gtaactcagg cccatggaaa cagtggcatg
      241 gttcgtgcca aattccgaag cagccttcct gcaaaggcca tcggacacag aatccttgtg
      301 atgctgtacc catcccggat ttaaactaat ggagagtaaa ctaatggaga gtaaataaat
      361 aaaagtagat ctgtgctctt gttaaaaaaa aaaaaagggg ggggttgggg atttagctca
      421 gtggttgagc gcttgcctag caagctcaag gccctgggtt cagtccccag ctccgaaaaa
      481 aaaacaacaa caacaacaac aacaaaaaaa aaaaaaaaaa agaggtagaa gcccaagtat
      541 cacgagttca aggttttcct cagctatata acaagttgga gactacctaa ggctctgcct
      601 taaacacaaa atgaaaaagc tggagatata gtttggttgg ccaagctctt gtcttgcaag
      661 catgaagacc tgaatccaat cctctggaac cagaaggcaa taaagcaaac atggaggcgt
      721 atgcttgtaa tcctacaacc aaggaggcag aggtaagtgg attcctctga ctccctggcc
      781 tattctacca gctccagggc aatgagagac cctgtcaaaa gcaaacacag tgcccgagaa
      841 atgacaccca aggctgtcct ctatcctctc tctatacata tctatacata agtgcacatg
      901 cacctactca catgcctgct cgcatgcgtg cacacccaca catgtaagcg cgcacccaca
      961 cacacacaca cacacacaca cagagagaga gagagagaga gagagagaga gagagagaga
     1021 gagagagaga gagaacagca ctaagatacc ttgccctggg tttgcagctg taagggtctg
     1081 acaggcatca gggaccagcg tagatcagat gggcacatgc aaaagcctgt cagagtggtc
     1141 tgctcttctg acatgtgggc tgctttgcgt gcaaggtcct gactctataa agaaaagtaa
     1201 cttaaa
//
