LOCUS       XM_039108539            2215 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus endogenous retrovirus group K member 9
            Pol protein-like (LOC108352017), mRNA.
ACCESSION   XM_039108539
VERSION     XM_039108539.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2215
                     /gene="LOC108352017"
                     /note="endogenous retrovirus group K member 9 Pol
                     protein-like; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 EST, and 96% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108352017"
                     /db_xref="RGD:11503387"
     CDS             635..2053
                     /gene="LOC108352017"
                     /codon_start=1
                     /product="igE-binding protein-like"
                     /protein_id="XP_038964467.1"
                     /db_xref="GeneID:108352017"
                     /db_xref="RGD:11503387"
                     /translation="MGQTWKGPRQKIGGENLRLGTKAIWKLVKNCLTDEVCKAAVVGG
                     QTTLEVLRDSMSETERSERLGARKKKDVLRKKKSPPIKSADKGVLKLSDSGTSLSTQQ
                     PGGGASIYPVKELEALNLDSSDSSENGILDSEEKAELDEEAARYEEEKYHPEKRKKGN
                     KKLLPRQSPTAPPPYEERSCAFSLVPDRVRRKLRMMFPVFETQEGERVHAPVEYNQIK
                     ELAESVRKYGVTANFTLTILERLALNYLTPADWQMIAKATLVNMGQYMEWKALWYEAA
                     QTQAKSNATALTPEQREWTFELLTGQGRFAADQANYHWGAYIQVSSLAIKAWKALTRK
                     GRADNQLTRIIQGPQEPFSDFVARMTETAGRIFGDAEQAAPLIEQLVYEQATQECWAA
                     IAPRKNKGLQDWLRVCRELGGPLTNAGLAAAILQSRQRPLKGTDTRSCFQCGKMGHLK
                     RDCRITKGDRRPATICARCGKG"
ORIGIN      
        1 cctgcgtcat tcttgctggc gagacggagc gtgggacatt tggtgccaga aacctgggaa
       61 aaagacctca tcagcacctc cggagacccc ttggtgacaa ggaggattca gaactgcagg
      121 taaaaaaaaa tactttcaga gaggcatgcc tttcttggat tttggtctgg ggttgtcgcc
      181 gccttgggaa ggatttgttg aggctatggt atttgttctc ggagccaccc tactctttct
      241 tattattatg tactgttttc accgtttctg ctgctaaaag gacagcagct ggatgcgcgt
      301 ctcagtctct cgtaaataag tgagcttcgg gcagctcccc tttactgttg gggagcaggg
      361 acgcgatagc actgcctggg aagtgcgcgt aagactcccg tatataagag agcggcgtgt
      421 ctgtttctac tcatgccttg tcagacggac gtagataagc cgctgggcgt tcttggtccc
      481 tcatgggatc ctcacagtct gtgatcacgg ctctggaaac ggtgctaaag cagagggaca
      541 ttaaaattgg aggaagaaca cttaaaaact ttgtgaaaga agtggacagg gtggctccgt
      601 ggtttgcctg cttaggctca tttacaattg cctcatggga caaacttgga agggacctag
      661 acagaaaatt ggcggagaaa atctgcgtct aggaactaaa gccatatgga aactagtcaa
      721 aaattgctta acagatgaag tgtgcaaggc agcagttgta ggagggcaga ccactctcga
      781 ggtacttcga gacagtatgt cagaaactga acgtagtgag agattaggcg cgcgcaagaa
      841 aaaggacgtc ctgagaaaga aaaagagccc tcccattaag tccgcggata agggagtgtt
      901 aaagctttca gattccggca cttccctctc tacacagcaa ccgggagggg gagccagcat
      961 ataccctgtg aaagagctag aagcgctgaa cctcgacagt tctgatagct ctgagaatgg
     1021 aatcttagat tcagaggaga aggccgagtt agatgaggaa gcagctagat atgaggaaga
     1081 gaaatatcac cccgagaaac gaaagaaagg taataaaaag cttctgccgc ggcagtcgcc
     1141 aaccgcaccc cctccgtacg aggagcgctc ttgcgcattc tctttagtcc ccgatagggt
     1201 gagaaggaag ctgcggatga tgttcccggt ctttgaaacg caggagggtg agcgggttca
     1261 tgccccagtc gaatataatc agataaaaga gctggcggag tctgtcagaa agtacggagt
     1321 tacagccaat ttcaccctaa ccattcttga aaggctggcc ctaaattatt tgacacctgc
     1381 cgattggcag atgattgcaa aagcgaccct tgtgaacatg ggccaatata tggaatggaa
     1441 ggccctttgg tatgaggcag ctcaaacaca ggccaaatct aatgccacgg cgttaacgcc
     1501 tgagcagcga gaatggacgt ttgaactctt gacaggacag ggtcgcttcg cagcggacca
     1561 agctaattac cattggggcg cttatattca agtctccagc ttggccatta aggcctggaa
     1621 ggcactcact aggaaaggca gggccgataa tcaacttact cgtatcatcc agggacctca
     1681 ggaaccattc tcagacttcg tagccagaat gacagagact gcaggacgaa tatttggtga
     1741 tgcggagcaa gcagcaccgc tcatagaaca gctcgtttac gaacaagcca cccaggaatg
     1801 ctgggcagct atagcaccca gaaaaaacaa aggattacag gactggctca gagtctgcag
     1861 agaactcggc gggcctctta ctaacgcagg cttggcggcc gccattctcc agtcccggca
     1921 acgccccctt aaagggacag atacaagatc atgttttcaa tgtggaaaaa tgggccattt
     1981 aaaaagagac tgtaggataa ccaagggaga caggaggcct gcaactatct gtgcccgatg
     2041 tggcaagggc taacataggc ctgaccagtg ctgttcagtg agggatatta agggaaaact
     2101 actccctcct ttggaagctc agcctaatgg gatgtcaaaa aatggatggt tgggcccccg
     2161 gtcccagggc cctcaaagat atgggaaccg ctttcagaaa gccatgacct tgaca
//
