LOCUS       XM_039084309             578 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L21 pseudogene
            (LOC108352001), mRNA.
ACCESSION   XM_039084309
VERSION     XM_039084309.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 15% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..578
                     /gene="LOC108352001"
                     /note="60S ribosomal protein L21 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 12 Proteins, and 78% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108352001"
                     /db_xref="RGD:11403437"
     CDS             1..567
                     /gene="LOC108352001"
                     /codon_start=1
                     /product="60S ribosomal protein L21-like"
                     /protein_id="XP_038940237.1"
                     /db_xref="GeneID:108352001"
                     /db_xref="RGD:11403437"
                     /translation="MKPWVQPPALRKQSMVLNIRNSGIHEGRQTNTKGKRRGTRYMFS
                     RPFRKHGVVPLATHMQTYKKGDIVDIKGMGTVQKRMPLKCYHGKTGKVCNVTQHAAGI
                     IVNKQVKGKILAKRINVRTEHIKHSKSRDGFLKRVKENDQKEKEAKEKGTWVPLKRQP
                     APPREAHFVRTNGKESELLEPMPYKFMA"
ORIGIN      
        1 atgaagccct gggttcaacc ccctgcactg cgtaaacaga gcatggtgtt gaacatccgt
       61 aattccggca ttcacgaggg aaggcagaca aacacaaagg gaaagaggag aggtactcgg
      121 tatatgttct ctaggccttt taggaaacat ggagtcgttc ctttggccac acacatgcaa
      181 acctacaaga agggtgatat tgtagacatc aagggaatgg gcactgttca aaaaagaatg
      241 ccccttaagt gttaccatgg caaaactgga aaagtctgca atgtcaccca gcatgccgcg
      301 ggcatcattg taaacaagca agttaaaggc aagattctgg ccaagaggat caatgtgcgg
      361 actgagcaca tcaagcactc aaagagcaga gacggcttcc tgaagcgggt gaaggagaac
      421 gatcagaagg aaaaggaagc caaagagaag ggcacctggg ttccgctgaa gcgccagcct
      481 gcgccaccca gagaagccca ctttgtgagg actaacggga aggagtctga gctgctggag
      541 cccatgccat acaaattcat ggcctaatat acacaaag
//
