LOCUS       XM_039084964             433 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus protein transport protein Sec61
            subunit gamma pseudogene (LOC108351999), mRNA.
ACCESSION   XM_039084964
VERSION     XM_039084964.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 26% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..433
                     /gene="LOC108351999"
                     /note="protein transport protein Sec61 subunit gamma
                     pseudogene; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 1 Protein, and 78% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108351999"
                     /db_xref="RGD:11451021"
     CDS             1..357
                     /gene="LOC108351999"
                     /codon_start=1
                     /product="protein transport protein Sec61 subunit
                     gamma-like"
                     /protein_id="XP_038940892.1"
                     /db_xref="GeneID:108351999"
                     /db_xref="RGD:11451021"
                     /translation="MSLLFKSPICQKSQICSLLPLFELFKVHSVAVQFSSKLRVSSLS
                     NHHPTNVDQVMQFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFPIMGFIGF
                     FVKLIHIPINKIIVGG"
ORIGIN      
        1 atgtctctgc tgtttaaatc tcccatctgc caaaaaagcc agatctgcag tctcctgcct
       61 ctgtttgaac tgttcaaagt ccactcagtg gcagttcaat tctcttctaa gctacgtgtc
      121 tctagcctct caaaccacca tcccacaaac gtggatcagg taatgcagtt tgttgagcca
      181 agtcggcaat ttgtaaagga ctcgattcgg ctggttaaaa gatgcaccaa acctgataga
      241 aaagaattcc agaagatcgc catggccaca gcgattggat tccctatcat ggggttcatc
      301 ggcttctttg tgaaactgat ccacatccct attaataaaa ttattgtggg tggctgagtc
      361 ctttctcatc ttgggactgg tgaaccaatg agggggtgac aagctcatga agtaaaaagt
      421 tgcctggaaa aaa
//
