LOCUS       XM_039084737            4778 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC108351974
            (LOC108351974), transcript variant X2, mRNA.
ACCESSION   XM_039084737
VERSION     XM_039084737.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039084737.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4778
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4778
                     /gene="LOC108351974"
                     /note="uncharacterized LOC108351974; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:108351974"
                     /db_xref="RGD:11410190"
     CDS             1601..2665
                     /gene="LOC108351974"
                     /codon_start=1
                     /product="uncharacterized protein LOC108351974"
                     /protein_id="XP_038940665.1"
                     /db_xref="GeneID:108351974"
                     /db_xref="RGD:11410190"
                     /translation="MASSRSSKTTCLRVQSGKQARLGGRNWKYLITLHLQGRRHLITL
                     QLQERRHLITLHLQERRHLIILHLQGKRHLITLHLQRRRHLITLHLQGKRHLITVHLQ
                     RRRHLITLQLQGMRHLITLHLQRRRHLITLQLQGKRHLITLHLQRRRHLITLQLQGMR
                     HLITLHLQRRRHLITLQLQERRHLITLQLQERRHLITLQLQGMRHLITVHLQKRRHLI
                     TLHLQERNHLITLHLQRRRHLITLHLQGMRHLITLHLQRRRHLITLQLQERRHLITLQ
                     LQERRHLITLQLQERRHLITLQLQGKRHLITVHLQKRRHLITLHLQERNHLITLHLQR
                     RRHLITLHLQGRSRVADACT"
ORIGIN      
        1 acagggcgag ctgtcggata catcaagttg ctggacgcag cctggtgaag aagaggggga
       61 ggatgacaga tgctgagcag aagtcagcaa atgcccttct cagctttatc tatgccagaa
      121 agctctcttc cacacttcaa ctgttccact aaacaccctg tgcgtaccgc acccatcacg
      181 aactaggcag gagccccctg aagaatgtgg ctcctcaccc gactctgccg gatttgaggt
      241 actgatgagt cacatcgata gccaagacct ggacccacgg ggacttgacc cttcctcttc
      301 acctgcccag tgtctagatg catgaagcct tttctgtctt ccctgatgtt ttgggaaatg
      361 ttgacagtag tctctggctg aatagatcca atgtgtcccg gaggcaaggt tatatgaaag
      421 gccttgtagg gaatgccatg actttaggaa cctggcagga gagggtctcc ttggacctgt
      481 gggtgacctt ggtgctgagg gtaggtgtgt catccagtaa gacagctgca tgataagcag
      541 gaggaggtct aggtgagttc agggcagtca ctggggatgt ccgtggatgt ccctgctgtc
      601 tatttcctgt cccaaggtag cttttagtaa taccaagggg ccatgtttta gggactgtct
      661 gcaaatgaca gatcttgaca ccagaggaca actcttaaga tccctgatat attcctccct
      721 ctgtctctgg agtgccttgg attgagccct gtgctcagag actaatgtca gacatgagaa
      781 tcatctctga ggaagctggg cacactgtct gccctgtgag agtgaatcac tccaatcgct
      841 cactcccaag atagcttggg tgtcacttgg cccaccatga gcatggcagg tgaagtacac
      901 aagttcactc atgcttttgc taaacagtct gtgacccgtg gtgattttca cacaaaacca
      961 cctctaacaa gtcaacaacc gagatgaaaa cgcacactat aaacaccgac catcacacac
     1021 agtttcaaga gcacccagtg acatctgctg cactgtgcaa ccgccacctc tggcttgttc
     1081 agaaaggttt catcagcccc accaaaaccc acaaccattt gacaggaaac catgtttaac
     1141 ttcctcccca cccttcagag ccacagaatg aagaaggatc ccttgacggt gggcagggag
     1201 caaacacagg ctctccacag agatgccatc cttgttccag ctccgagggg aacccagggt
     1261 gcctgcttga aatacccaac caccgttgcc accagccgcc accttccacc cttccaccag
     1321 agagcaggtg ctaaattggc cctccagctg cggaacagta acaattaacg tcaccacagc
     1381 tgtaattttt gaggaaatga gaaacattaa taactactac caaaagctga aaaccaaggc
     1441 gaacacaaag cacaacactg cctggaggtg aaaggggttc agatgggcca ctgcccctgg
     1501 agggcatgga cggggcctca cttaccctgg aactgggctt tcctgaggga aaggaagcat
     1561 tggcatgtgg atctgagagt ttgaggtcag cctggtctac atggcaagtt ccaggtcatc
     1621 caagactaca tgtttaaggg tacagtctgg caagcaggca agacttggtg gcagaaactg
     1681 gaaatacctg atcacactgc acctgcaggg aaggagacac ctgatcacac tgcagctgca
     1741 ggaaaggaga cacctgatca cactgcacct gcaggaaagg agacacctga tcatactgca
     1801 cctgcaggga aagagacacc tgatcacact gcacctgcag agaaggagac acctgatcac
     1861 actgcacctg cagggaaaga gacacctgat cacggtgcac ctgcagagaa ggagacacct
     1921 gatcacactg cagctgcagg gaatgagaca cctgatcaca ctgcacctgc agagaaggag
     1981 acacctgatc acactgcagc tgcagggaaa gagacacctg atcacactgc acctgcagag
     2041 aaggagacac ctgatcacac tgcagctgca gggaatgaga cacctgatca cactgcacct
     2101 gcagagaagg agacacctga tcacactgca gctgcaggaa aggagacacc tgatcacact
     2161 gcagctgcag gaaaggagac acctgatcac actgcagctg cagggaatga gacacctgat
     2221 cacggtgcac ctgcagaaaa ggagacacct gatcacactg cacctgcagg aaaggaatca
     2281 cctgatcaca ctgcacctgc agagaaggag acacctgatc acactgcacc tgcagggaat
     2341 gagacacctg atcacactgc acctgcagag aaggagacac ctgatcacac tgcagctgca
     2401 ggaaaggaga cacctgatca cactgcagct gcaggaaagg agacacctaa tcacactgca
     2461 gctgcaggaa aggagacacc tgatcacact gcagctgcag ggaaagagac acctgatcac
     2521 ggtgcacctg cagaaaagga gacacctgat cacactgcac ctgcaggaaa ggaatcacct
     2581 gatcacactg cacctgcaga gaaggagaca cctgatcaca ctgcacctgc agggaagaag
     2641 cagagtggca gatgcttgta cttagcttgc tctttccttt gtattccatt cataactcca
     2701 gatcatagaa agctgctgct acagttaagg taggttttgt cgtgccaatg aacccagcct
     2761 gttaataaat aactcctcct tacaggaatg cccagggcta acaactctct gtaactcctc
     2821 acagatgttc cccatacatg gtggttcctg agttcccaca gggatccctc aggtcccagc
     2881 tatggcttcc tgacatcgca cctggagctt ttaggagtca cacccgtaga tcccaagatc
     2941 tacctgcagt tcttggggtc cctcctacca cctctgaggt cttatctagg gtttacttag
     3001 gccctaccaa tagttctagg gctcccacct gtggttcccc agagctcccc taaaattttc
     3061 tggcttctag acttggaagg tgaattacca gaagccagag ccctgccaag gtcccctctc
     3121 ccttcagcgt ctcatgtcca ctctgcatgt ggccattgaa agcaaaggca ctcactgact
     3181 gttgttaggt gaagcaagcc atagagcggg aatgggatga ttctcctgag tcgtgcattt
     3241 gccccacagt cgatgaactg aattactaga gccatctgtt tagagcaatc gatcctccca
     3301 atgacctata agcaatggac caagaattcc ttggctatct cagaactggt aaccggagta
     3361 aagggaagca aaaagagctg aactccacgc aagacggttc tcataccctt gatgctgtct
     3421 agcaccaaat caaggtcacc gattcatcta aagaatccca aagggcactt gacctcaatt
     3481 tttataattt tctcactgaa atgcaagaga aacttccttg ctgttctctt attccccctt
     3541 tgttactccg aaaaagttga agttgagatg gcaattctct ctggaattta atatctgttc
     3601 tcaactatcc tgtttaattg ctaaccaatt ctttagaaaa ttgaatcact atattacact
     3661 gtgtttatgc actgatggcc tgggaagggt tggcagggac ctccgccaaa gttaacagcg
     3721 gctgtgtttc aagctgtgag cggtttatta gaaaatttca tgccggaatt ttccttcact
     3781 ttaatttctt tggcttttta aatttttaag ttgaagtccc atgttgggtg taagcgtgtt
     3841 aaagctggga ccgcagtgtg aaaccctcgc cacctgcctt atagttgctg ttacttgaaa
     3901 gcctattaaa caaggtccga gagcatcatg gggagggctt gcagatagaa gagtattaag
     3961 gagctgcccg acaccaccat agccctgttc cacacctgtg ggtgcttggg tcagggagtg
     4021 gccactggcc acctccacct tgggacccag atctgtctat gagaaaatgc ctcatatctg
     4081 agaggctttg atgttcatgg tctaggagtc tttctaaagt tagatactcg caggagagta
     4141 tacagcaagg caagaagagg tggcataggc tagaccctgg ttttccccta gttcccagct
     4201 gacactgggc aattggattt tcctgctgtt cagctaacaa catctgatgg tgtgtgctgg
     4261 tcaccttaaa gcaaaccaga ggcacttgca aagaggaagc cttaaaagag aagacgtctc
     4321 catcagattg gcctgtaggt aggtctgggc caggcatttc ttgattaatg atggatgtag
     4381 gagagcccag ctcactgtca gcgctgccac acctgggcaa ggtggtctcg atttatataa
     4441 aaccaaatga gttagccagg ggactaagcg ggtaagctta gtgacccctc catggtctct
     4501 ccttcagttc atgcctccag gttcttgact tcccttcata ctgaattata aactctgaac
     4561 tgaaataaac cctttcttta ccaagttggt tttggttgtg atgtttatca caggctctct
     4621 gcccgtgtct cctttcctgg acaacacaat gccctgctat gtcactaagg ttgcaccttc
     4681 ccaaggtgtc ttggaaacgt atttacatct gttctagaga acctccatgt gcactttaat
     4741 accatccaat gaattgccat aaaggaacat tattcttt
//
