LOCUS       XM_039082888             892 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S27-like
            (LOC108351831), mRNA.
ACCESSION   XM_039082888
VERSION     XM_039082888.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082888.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 40% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..892
                     /gene="LOC108351831"
                     /note="40S ribosomal protein S27-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 59 Proteins, and 80% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108351831"
                     /db_xref="RGD:11383464"
     CDS             1..429
                     /gene="LOC108351831"
                     /codon_start=1
                     /product="40S ribosomal protein S27-like"
                     /protein_id="XP_038938816.1"
                     /db_xref="GeneID:108351831"
                     /db_xref="RGD:11383464"
                     /translation="MANFGGEGAAPAPGEPDMKQPWSAGQRSCSSEHGLLETLGHFLL
                     DFLPSRFQWPPHENTPLAKDLLHPSPEEEQRKHKKKHLVQSPDSYFMDVKCPGCYKIT
                     TVFSHAQTVVACVGCSTVLCQPTGGKTRLTEGRSFRRKQR"
ORIGIN      
        1 atggcaaatt ttgggggtga gggtgctgcg ccagctccag gggagcctga catgaaacaa
       61 ccgtggtcag caggccagag atcgtgttcc tcggaacatg gtctcctgga gacacttggc
      121 cacttcctcc tcgactttct gcctagccga ttccaatggc ctccccatga gaacacgcct
      181 ctcgcaaagg atctccttca tccctctcca gaagaggagc agaggaaaca caagaaaaag
      241 cacctggtgc aaagccccga ttcctacttt atggatgtga aatgcccagg atgctataaa
      301 atcaccacgg tctttagcca cgcacaaacg gtagtcgcgt gtgttggctg ctccactgtg
      361 ctctgtcagc ctacaggtgg aaagaccagg ctgacagagg gacgctcctt caggaggaag
      421 cagcgctgaa agcccccgag acaagatgag tgggaacctt cccagcaaac acattttgga
      481 tatataaccc ccccccaaaa aaagacaatt acatgaatat tggctaagag agagtaaaag
      541 actaaagatt cctttcagct ggctgtcctg ttgttatccg agagatgata tttagagact
      601 gaggtaaatg aggtttatga ccaccgcctg gcaccagtct gattctcagg aaagtttatt
      661 tcctgtcttg ctttctgttc tgaactttat gtaaacggtt aaactttttc ttggttattg
      721 tttgagtgta ccctggtaag gggccaaaaa attagctcct gttcaagcat cgtttataac
      781 cacaaagcag atttcagtaa aatcgcagca gattcaaacc accctgagtg tgttgtgtct
      841 gtctgtcatt gtgccttcct gagtaccaga gtctggtgtc ctctgtctga gt
//
