LOCUS       XM_039082790             316 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S27-like
            (LOC108351811), mRNA.
ACCESSION   XM_039082790
VERSION     XM_039082790.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082790.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 17% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..316
                     /gene="LOC108351811"
                     /note="40S ribosomal protein S27-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 61 Proteins, and 77% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108351811"
                     /db_xref="RGD:11443688"
     CDS             1..306
                     /gene="LOC108351811"
                     /codon_start=1
                     /product="40S ribosomal protein S27-like"
                     /protein_id="XP_038938718.1"
                     /db_xref="GeneID:108351811"
                     /db_xref="RGD:11443688"
                     /translation="MGQSLNLRHPLEQTLQNTPLSKDLLHPSPEEERRKHKEKHLVQS
                     PNSYFMDVKCPGCYKITTVLSHAQTVVVCAGCSTVLCQPTGGKTRLTEGRSFRRKQY"
ORIGIN      
        1 atggggcaat ccctgaacct gcgccacccc ttggagcaaa ctctgcaaaa cacgcctctc
       61 tcaaaggatc tccttcatcc ctctccagaa gaggagagga ggaaacacaa ggaaaagcac
      121 ctggtgcaaa gccctaattc ctactttatg gatgtgaaat gcccaggatg ctataaaatc
      181 accacggtct taagccacgc acaaacagta gtcgtgtgtg ctggctgctc cactgtgctc
      241 tgtcagccta caggtggaaa gaccaggctg acagagggac gctccttcag gaggaagcag
      301 tactgaaagc ccctga
//
