LOCUS       XM_039080553            3143 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC108351606
            (LOC108351606), transcript variant X3, mRNA.
ACCESSION   XM_039080553
VERSION     XM_039080553.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3143
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3143
                     /gene="LOC108351606"
                     /note="uncharacterized LOC108351606; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 27
                     ESTs, 4 long SRA reads, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 44 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:108351606"
                     /db_xref="RGD:11460844"
     CDS             354..1454
                     /gene="LOC108351606"
                     /codon_start=1
                     /product="apolipoprotein L3-like"
                     /protein_id="XP_038936481.1"
                     /db_xref="GeneID:108351606"
                     /db_xref="RGD:11460844"
                     /translation="MGTPEEKCFLETVFFYLLDTRSLEDLQLLLTEEESWKHFVEGVG
                     LSREEEDALQEALAEIFEDSDGEEGDKLQRDLQGKKERKEEDALKEALGGNAADSDTE
                     DEDQLQNDKERFLEAYPQVRQELEERIKKLHALADKVDKVHRDCTISQVVASSSSAVS
                     GVLTILGLALAPVTAGVSLALSATGMGLGAAAAVTSVSTIIVEKVSLASAEAEASKLV
                     LTNKVTMNGMKEVLEQSGPRLLSVSTNSFKDLKNIKTSIQAIKLTKANPRLTTNAKRL
                     MTTGKISARKTRQVQKAFGGTALAMTKEARIMGATTAGLFLLMDVVRLVEDSKHLHEG
                     AKSVSAAELRQQAQDLEQKLQELNQVHDSLTQ"
ORIGIN      
        1 tgcttctaca cagccacggc catctgatcc tgctcaagct cagtaagttg agcctcttca
       61 cccctctgcc tctgcatcct cataaagcta cctcaagaca gagcgtaact gcctcattct
      121 aggagtggac tcggggaagg cactaggact ccagagtgta ctgaaaacca actgagacat
      181 ccagccttgt ggactgagca gctcctggag tctccaacct tccgttcata ggcagccttt
      241 gttggactag ctaaaccaca gcctggtgcc ttttcctcct gtagcctgga ccctggtgag
      301 ctgaaggaac acctgtcaag tcctctgcct gactcctaga cctagcagct gtcatgggca
      361 ccccagagga gaaatgcttc cttgagactg tgtttttcta cctcctggat acgaggagcc
      421 tagaggacct gcagctcctg ctgactgaag aggaatcctg gaaacatttt gtggaaggag
      481 ttggtttgtc cagggaagag gaagatgcct tgcaagaagc tcttgctgag atctttgaag
      541 attctgatgg agaagaagga gacaaactcc aaagagacct tcagggcaag aaagagagga
      601 aagaggaaga tgccttgaag gaggcccttg gtgggaatgc agctgactct gatacagaag
      661 atgaagacca actccaaaat gacaaggaaa ggttcttgga ggcttatcct caggtgaggc
      721 aggagctcga agagcgcatc aagaagctcc acgccctggc agacaaggtt gacaaggtgc
      781 acagggactg caccatctca caggtggtgg ccagctccag cagtgctgtg tctggagtcc
      841 tcacaatcct tggcctggct ctggcacctg tgacagcagg agtcagtctg gcactgtcag
      901 ccactggcat ggggctggga gcagcagcag ctgtgactag tgtttccaca atcattgtgg
      961 agaaggtaag cctggcgtct gctgaagctg aagccagcaa gctagtgcta accaacaaag
     1021 tcacgatgaa cggcatgaaa gaagttttgg agcagagtgg ccccagactt ctttccgtat
     1081 ccacgaattc cttcaaggac ctgaaaaaca tcaagactag cattcaagcc atcaaactga
     1141 ccaaagccaa ccctcgccta acaactaatg ccaagcgtct catgaccaca gggaaaatat
     1201 ctgcccgaaa gactagacag gtacagaaag cctttggagg tacagctctg gcaatgacca
     1261 aagaagcccg gatcatgggt gcaaccactg caggtctttt cctcctgatg gatgtagtca
     1321 ggcttgtgga agactcaaag catttgcatg agggagctaa gtcagtgtct gctgcagagc
     1381 tgcgacagca ggctcaggac ctggagcaga agctgcagga gctcaaccag gttcacgaca
     1441 gcctgactca gtgacctctt cctcttcagt gcagctcaga ggactgggag ggagtgtgct
     1501 ggacagagcc atgaacacat gggagccccc gactgtatcc cttttaaggc agttcctgcc
     1561 aaagggagag ggcacactaa gctacaggaa gtcagaacac aaatgggaca gtctcatgac
     1621 ctccaaccag actccagctc ttaggtccat cagcctccca acttcccaac taaaccaagc
     1681 tcccatgctg gggagtccta acaatcagac tctgactgtg aacatcattt cctgttcttg
     1741 gttgtgggtc ctgtgggtga aatgctcaag actagacaga gaggatgctg ggaataccaa
     1801 ctgtccagtc atcacaagcc ctacatgtca ccatggatgc tatggaagga gagtgacagg
     1861 atatgactgg tgagttcctc tctctgctac cagactcctg ggaaaatcat aagctttaat
     1921 gactatcgat gtttaaaatc tgctgtaatt ggatgagatc tgccgagatg gacaggaaaa
     1981 cggctacact tgattcatga tttctgaaga ataaatttgt gagcgctgac ccagacatgc
     2041 tttgtgtgct ttctgcaagt aatatcatat tttctggatt attaactgtc aggtgataat
     2101 tccctcccaa tttttaacat ctcctctttc aaaaatcatc ttctttattg tgctttaaga
     2161 ggaacatttg agatttccac gtgggccttt tcctcctcct tgttgcactt ctgacggctg
     2221 aggctcccct gagactgcac tacagtgcac agtgtcccct gcatcatggc agctcaggtg
     2281 gcctccttcc catgttctgg caaatggaga ctaagggatg acctgtgagg tgtctaggtc
     2341 ttgtccatta gagaaagact cttccatagt ccatctgtcc tccctttggg ctgggtatgt
     2401 gactaagtga gagcatggtg tggagtcagc ctcttctgtg gtgcacatgc agggacagga
     2461 tggcctcctg gatgaactgg ggaagaaagc tccctacacc tagagctacc tagcagcttg
     2521 cacctcagtg tccaagttca tcgagtcccc tctcctgttg aacccatgtg tgaacactag
     2581 tgaaccctag ttctcctggt gggcccatgt gtgaacacta gtgaacccta gttctcctgg
     2641 tgagcccatg tgtgaacact agtgaaccct gtgccagctc ttcagcatct ctccagtgac
     2701 caacccaaga gctatcacca ggctccaccc cttactgaac cttgaacccc tatactccct
     2761 ccagaacctc tcagcctggc cctttgggac attgtttttg tgaaaccctg tgcctttgtc
     2821 aatgaactct tgaaggctct catgtcctga aaacttctat actacagtcc tttgtatgaa
     2881 taaccacttt aggtgtccag tccccagaca ggttccagtc cagggtcact ttacctccat
     2941 agttctgcca cctgggagca cacctacctt cctttacaaa gaagaggata cagcagccac
     3001 ggtgggtgtt gggggagaat cgagactgcc ggggtcggga attagctcag tggtagagcg
     3061 tttgcctagc aagcgcaagg ccctgagttc ggtccccagc tccgaaaaaa aaaaaaatta
     3121 aaaaagagaa tcgggactgc cta
//
