LOCUS       XM_039080288             443 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L35a pseudogene
            (LOC108351519), mRNA.
ACCESSION   XM_039080288
VERSION     XM_039080288.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039080288.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..443
                     /gene="LOC108351519"
                     /note="60S ribosomal protein L35a pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 long SRA read, 13 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108351519"
                     /db_xref="RGD:11405140"
     CDS             65..397
                     /gene="LOC108351519"
                     /codon_start=1
                     /product="60S ribosomal protein L35a-like"
                     /protein_id="XP_038936216.1"
                     /db_xref="GeneID:108351519"
                     /db_xref="RGD:11405140"
                     /translation="MSGRLWCKAIFAGYKPGLLNQREYTALLKIEGVYARDETEFYLG
                     KRCVYVYKAKNNTVTPGGKPNKTRVIWGKVTRAHGKSGMVHAKFRSNLPAKAIGHRIR
                     VMLYPSRI"
ORIGIN      
        1 cctctttccg ccatcttggc gcctttggaa gcccactggg aacaggactt ctaaaaaaac
       61 aagtatgtct ggaaggctgt ggtgcaaggc catttttgct ggctacaagc caggcctcct
      121 gaaccaaaga gagtacacgg ctcttcttaa aattgaaggt gtttatgccc gagatgaaac
      181 tgagttctac ttaggcaaga ggtgtgttta tgtgtacaaa gcaaaaaaca atacagtgac
      241 tcctggaggc aaaccaaaca aaaccagagt gatctgggga aaagtaactc gggcccatgg
      301 aaaaagtggc atggttcatg ccaaattccg aagcaacctt cctgcaaagg ccattggaca
      361 cagaatccgt gtgatgctgt acccatcccg gatttaaact aatggagagt aaataaataa
      421 aagtagattt gtgctcttga aaa
//
