LOCUS       XM_039080144            1875 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus SNRPN upstream reading frame protein
            pseudogene (LOC108351468), mRNA.
ACCESSION   XM_039080144
VERSION     XM_039080144.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1875
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1875
                     /gene="LOC108351468"
                     /note="SNRPN upstream reading frame protein pseudogene;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 7 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108351468"
                     /db_xref="RGD:11466148"
     CDS             643..855
                     /gene="LOC108351468"
                     /codon_start=1
                     /product="SNRPN upstream reading frame protein-like"
                     /protein_id="XP_038936072.1"
                     /db_xref="GeneID:108351468"
                     /db_xref="RGD:11466148"
                     /translation="MERGRDRLHLRTTEQHMPEIEVQVKRRRTASLSNQECHLYPRRS
                     QQQQISVVDFQAELRQAFLAETPRGS"
ORIGIN      
        1 atcacgttca ctgggaatcc agctttggca ggacttgttg ctattattat tgtattacat
       61 gggaacactg agcccttcct taacgtaggc tgtgaattat atcacacacc caacctaata
      121 ttatttgggt ttacgcttgg agtatttgtc taatcatgaa ttctgacata aagggactgg
      181 aggccttctc tggccctatt gtctcctgga aatcatggtt gtgttcagac atcttgtgaa
      241 gaccaatgtt gtcaagatag gttcgtgtgt tactagtcaa actggtgtgt cgtgattaag
      301 tgggactgga agaaacgcag agctgttggc agccaggcat ggaggagact caggcctggt
      361 cctggcgtcc agcactgctc taagggcaga aagagaacaa agcatgtgct gtcctttgga
      421 ttcctggact taatcacaat gggaaggagg gagctggaag ccaggcttgc aacacgtctt
      481 cctctgctga gatcgctcac accattactt tgctcacatt tcccaccact tctgagaggt
      541 ttctggtgga atgtttaggg tcttgtttta agactaagat cgagagagta gagggtgctg
      601 gagatgccag acgcttggtt ctgaggaggg atttgcaacg caatggagcg aggaagggat
      661 cgtttacact tgagaactac tgaacagcac atgccagaga ttgaggtcca ggtcaaacgt
      721 agaaggacag cctcactgag caaccaagag tgtcacttgt acccacggcg ttctcagcaa
      781 cagcaaattt ctgtggtgga tttccaggca gaactgagac aggcgttctt agctgagaca
      841 ccaagaggta gttaaagcag tattggaact tcaaggtggt ggaagtcaac aaaaacagga
      901 cctatccact gtttgtgaaa ctttggtcaa gcttacactg tgttaatagt ctgcatcaaa
      961 cctttattta ttgcccttcc ccaagtatta aggatcttga aattttagtg ttgacaactg
     1021 ctattgcgga acagcaatca tgactgtggg taagagtagc aagatgctgc agcatattga
     1081 ctatagaacg agatgtatcc tgcaagatgg aagaatcttc attggcacct ttaaggcttt
     1141 tgacaagcat atgaatttga tcctctgtga ttgtgatgag ttcaggaaga tcaagccaaa
     1201 gaatgcaaac agccagaacg tgaagaaaaa cgggttttgg gtctggtctt gctacgtgga
     1261 gagaacttgg tttccatgac agtggagggt ccacctccta aagatactgg cattgctcgt
     1321 gtgccacttg ctggtgctgc aggtggcccc ggtgttggaa gagcagctgg cagaggagta
     1381 ccagcaggtg tacctattcc ccaagctcct gctggattag caggccctgt ctgaggagtg
     1441 ggaggcccat cccagcaggt catgacccca cagggaagag gcactgttgc agctgctgct
     1501 gttgctgcta ctgctagcat tgcaggagcc ccaacccagt acccgccagg acggggaact
     1561 ccacctccac ctgtaggcag aacaacccca cctccaggca ttatggctcc tccacctggt
     1621 atgagaccac ccatgggccc accaattgga cttctccctg ctcgagggac acctataggc
     1681 atgccccctc caggaattag agacccacct cccccaggaa tgtgtccacc aagaccctaa
     1741 gatacagtag ataaatctca gcccttctct ttccctacaa tgcttcttgt gaaattgtgt
     1801 agcctgcaag cttttgaccc ctcttactgc attaactata gataataaat acatagcgca
     1861 attgaaaaaa aaaaa
//
