LOCUS       XM_039113254             438 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L35a pseudogene
            (LOC108351255), mRNA.
ACCESSION   XM_039113254
VERSION     XM_039113254.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113254.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..438
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..438
                     /gene="LOC108351255"
                     /note="60S ribosomal protein L35a pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 87 long SRA reads, 13 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:108351255"
                     /db_xref="RGD:11360540"
     CDS             64..396
                     /gene="LOC108351255"
                     /codon_start=1
                     /product="60S ribosomal protein L35a-like"
                     /protein_id="XP_038969182.1"
                     /db_xref="GeneID:108351255"
                     /db_xref="RGD:11360540"
                     /translation="MSGRLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLG
                     KRCAYVYKAKNNTVTPGSKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIR
                     VMLYPSRI"
ORIGIN      
        1 ctctttccgc catcttggcg tctttggagg cctgctggga acaggacttc taaaaaaaca
       61 agtatgtctg gaaggctgtg gtgcaaggcc atttttgctg gctacaagcg aggcctccgg
      121 aaccaaagag agcacacggc tcttcttaaa attgaaggtg tttatgcccg agatgaaact
      181 gagttctact taggcaagag gtgtgcttat gtgtacaaag caaaaaacaa tacagtgact
      241 cctggaagca aaccaaacaa aaccagagtg atctggggaa aagtaactcg ggcccatgga
      301 aacagtggca tggttcgtgc caaattccga agcaaccttc ctgcaaaggc cattggacac
      361 agaatccgtg tgatgctgta cccatcccgg atttaaacta atggagagta aataaataaa
      421 agtagatttg tgctcttg
//
