LOCUS       XM_039111400            1176 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus endogenous retrovirus group K member 9
            Pol protein-like (LOC108351080), mRNA.
ACCESSION   XM_039111400
VERSION     XM_039111400.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 8% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1176
                     /gene="LOC108351080"
                     /note="endogenous retrovirus group K member 9 Pol
                     protein-like; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 47% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108351080"
                     /db_xref="RGD:11517012"
     CDS             1..1176
                     /gene="LOC108351080"
                     /codon_start=1
                     /product="igE-binding protein-like"
                     /protein_id="XP_038967328.1"
                     /db_xref="GeneID:108351080"
                     /db_xref="RGD:11517012"
                     /translation="MRKRDITPRNEREVIESFCHGSRQRRPLLPERVRRKLRMTFPVF
                     ETQEGEWVHAPVEYNQIKELTESVRKYGVTANFTLTILERLALNYLTPADWQMIAKAA
                     LVNMGQYMEWKALWYEAAQTQARANATALTPEEQEWTFELLTGQGRFTADQANYHWGA
                     YVQVSSSAIKAWKALTRSGGVDNQLTRIIQGPQEPFSDFVARMTETAGRIFGDTEQAA
                     PLIEQLVFEQATQECRAAIAPRKNKGLQDWLRVYRELRGPLTNAGLAAAILQSQRRPF
                     KGIDERSCFQCGKVGHLKRDCRITKGDKRPATICVQCGKGYHRPDQCRSVRDIKGKLL
                     PPLEAQPNEMSKNRLLGPQSQGPQRYGNRFQKAMTLTEEAPQEVTQNWTCVPPPTSF"
ORIGIN      
        1 atgaggaaga gagatatcac cccgaggaac gaaagggagg taatagaaag cttctgccac
       61 ggcagtcgcc aacggcgccc cctcctcccc gaaagggtga gaaggaagct gcgcatgacg
      121 ttccctgtct ttgagacaca ggagggtgag tgggttcatg ccccagtcga atataaccaa
      181 ataaaagagc tgacggagtc tgtcagaaag tacggagtta cagccaattt caccctaacc
      241 attcttgaaa ggctggccct aaattatttg acaccagctg attggcagat gattgcaaag
      301 gcggccctcg tcaacatggg ccaatatatg gaatggaagg cgctttggta tgaggcggct
      361 caaacacagg ccagagctaa tgccacggct ttaacgcctg aggaacagga atggacgttt
      421 gaactcttga caggacaggg ccgcttcaca gcggaccaag ctaattacca ttggggcgct
      481 tatgttcaag tctccagctc ggccattaag gcctggaaag cactcactag gagtggaggg
      541 gttgataatc aacttaccag aatcatccag gggccccagg aaccgttctc agacttcgta
      601 gccagaatga cagagactgc aggacgaatc tttggtgata ctgagcaagc ggcgccactt
      661 atagaacagc tagtttttga gcaagccacc caggagtgcc gagcagccat agcccccaga
      721 aaaaataaag ggttacagga ttggctcaga gtctacagag aactcagagg gccccttact
      781 aacgcaggcc tggcggccgc cattctccag tcccagcgac gtccctttaa agggatagat
      841 gaaagatcat gttttcaatg tggaaaagtg ggccatttaa aaagagactg taggataacc
      901 aagggagaca agaggcctgc aactatctgt gtccaatgtg gcaagggcta ccataggcct
      961 gaccagtgcc gctcagtgag ggatattaag ggcaaactgc tccctccttt agaagctcag
     1021 cctaatgaga tgtcaaaaaa cagattgttg ggcccccagt cccagggccc tcaaagatat
     1081 gggaaccgct ttcagaaagc catgaccctg acagaggagg ctccccaaga ggtgacacaa
     1141 aattggacct gtgtgccacc tccgacttct ttctaa
//
