LOCUS       XM_039111394             545 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L27a pseudogene
            (LOC108351073), mRNA.
ACCESSION   XM_039111394
VERSION     XM_039111394.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111394.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..545
                     /gene="LOC108351073"
                     /note="60S ribosomal protein L27a pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, 22 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108351073"
                     /db_xref="RGD:11489274"
     CDS             85..453
                     /gene="LOC108351073"
                     /codon_start=1
                     /product="60S ribosomal protein L27a-like"
                     /protein_id="XP_038967322.1"
                     /db_xref="GeneID:108351073"
                     /db_xref="RGD:11489274"
                     /translation="MHHHRINFDKYHPGYFGKVGMRHYLLKRNQSFCPTVNLDKLWTL
                     VSEQTQVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPKQPVIMKAKFFSRRAEEKMKG
                     VGGACSGGLKPLQRLIKYKH"
ORIGIN      
        1 ttaaagactc cacaagagag ccacggccac ggtcgcatcg gtaagcaccg caagcaccca
       61 ggaggcctcg ggaatgctgg aggcatgcat caccacagga tcaactttga caaatatcat
      121 ccaggttact tcggcaaagt tggcatgagg cattacctct tgaagaggaa ccagagcttc
      181 tgcccaactg tcaacctgga taaattatgg acgttggtca gcgagcagac acaggtcaat
      241 gcagcaaaaa acaagactgg agttgctccc atcattgatg ttgttcgatc aggctactac
      301 aaagttctgg ggaaggggaa gctccctaag caacctgtca tcatgaaggc caagttcttc
      361 agcagaagag ctgaagagaa gatgaagggt gtgggaggtg cctgttctgg tggcttaaag
      421 ccacttcaga ggttaattaa atacaaacat taaaaaaaaa aaaaaaaaaa aaagactcca
      481 caagagtcct agaatgtcat cctagaacag ataataaaca ttttcagttt gataaacaaa
      541 cttaa
//
