LOCUS       XM_039111102            1991 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus small ubiquitin-related modifier 2
            pseudogene (LOC108351070), mRNA.
ACCESSION   XM_039111102
VERSION     XM_039111102.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 9% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1991
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1991
                     /gene="LOC108351070"
                     /note="small ubiquitin-related modifier 2 pseudogene;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 14 Proteins, and 97% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108351070"
                     /db_xref="RGD:11380122"
     CDS             1..489
                     /gene="LOC108351070"
                     /codon_start=1
                     /product="small ubiquitin-related modifier 2-like"
                     /protein_id="XP_038967030.1"
                     /db_xref="GeneID:108351070"
                     /db_xref="RGD:11380122"
                     /translation="MGATEELVPLAYYPFINFRRYSGHVYAPSASSATAAASFRCSPC
                     CSCAPSVRTGCLFCEVAAEATPALAKADKKPTGGVKTEENSHINSKVVGRDGSAVRFR
                     RHTQLSKPMKAFCEQQGLSMRQSSFRFDGQPINETDTPAQLEMEDDGTIDMFQQQRGE
                     VY"
ORIGIN      
        1 atgggggcca ccgaggagct agtgcccctc gcctattatc cttttataaa ctttagaaga
       61 tattcaggac atgtgtatgc gccctctgcc tcatccgcca ctgctgccgc ctccttccgc
      121 tgctccccat gctgctcctg tgctccttcg gtgcggactg ggtgcctctt ttgtgaagtg
      181 gcagctgagg caactccggc acttgctaag gctgacaaga aacccacagg aggagtcaag
      241 actgaggaga acagtcatat taattcgaag gtggtgggac gagatggttc tgcggtgagg
      301 tttaggagac atacacaact tagtaaacca atgaaagcct tttgtgaaca acagggtctg
      361 tcaatgaggc agagcagttt ccggtttgat gggcagccaa tcaacgaaac agacacacct
      421 gcacagttgg aaatggagga tgacggtacg attgatatgt tccagcagca gaggggagag
      481 gtctactgaa aagggagcct gctactttac cccagaagct tgttatagac caagaacaca
      541 ttctcaatta gaaagtgaca actcagtccc accacatccc gacaactaca gtatagcttt
      601 ccctcttcct tcattttcct gtccccattt ctttattgta cataagcaac tggtgtattg
      661 cacaggcata ttgctctttt tctcttttcc ctttttaaat taaagggcca ttgttctgac
      721 tgattgacat cagatggaga tagtctgggg acagtactgg ttctgtgaga aaaaatcccc
      781 cttctccact attggcacgg tcattcaact cttgtctttt tattccatta agttactttg
      841 ctctcattgt tttaacaaaa gaacccaaca acacaaaatc cttttgtatc ttgtttgatt
      901 ggagaatttt aatgttttcc attgatcatt gtaaaaccaa gggcaatttt tataactgtt
      961 tagtgcatga ctgttacatg tagggcaatc cgtctttaag tagggacaaa ttactcttga
     1021 ataaaataat cttagttttc ccttcaagtc aagcaacttg ttgtttaaat aaacttctta
     1081 tttaaaaaga gatattcaga ttgattttaa tgtatgtgta tcagtgtttg cctgtgtgtg
     1141 tgcatgtgca ccacacatat acctggtaga gatcagacga gaagattcat ttccctggac
     1201 tggagttaga gagacggtgt gggacactac gtggtttcta gaaactaaac ctgggtcctc
     1261 tgcaggacag caagtaccct aagcactgaa acatctctcc agcccctttt cctgtttctg
     1321 atgatactga ggtgacataa aatatgtgtt tactgtaata ttcacagagt ccacctcctc
     1381 ccaccactga gcccacatgc tcttctattg tcacttaaat aagaaatttt attgtatata
     1441 aaaatttaaa attagtaggt aaaggaaaca agttgaataa aaatattatt atactttgat
     1501 atttttcatt ctaagtcttt tctagcagac ataaatgtag attgtatata atcctaagaa
     1561 aaattctttt aattctattc agagcaagat atgtgtattt gatattaaaa agagattagg
     1621 gagtcttaat tttgttaata caaataaatt ggcctaaatc agtaatgcca cagaattaga
     1681 aacatactaa tcacatttgg cccttttgta acatactgtt gtctccaact ggctttggag
     1741 aattgtttcc attcagttga attcttagaa gtaatctaat ttacaatgtt tgcttgtttt
     1801 ttcaaaattt ccatacacta taattaaaaa ccttcttgtt cttttctgca caatgatatt
     1861 ttgttagttg ttacaaaata gttttaaggg gttggggatt tagctcagtg gtagagcgct
     1921 tgcctagcaa gcgcaaggcc ctgggttcag tcctcagctc tggaaaaaaa aaagacaaaa
     1981 taacaaaata g
//
