LOCUS       XM_039111175            7500 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus selection and upkeep of
            intraepithelial T-cells protein 6-like (LOC108351016), transcript
            variant X1, mRNA.
ACCESSION   XM_039111175
VERSION     XM_039111175.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111175.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7500
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7500
                     /gene="LOC108351016"
                     /note="selection and upkeep of intraepithelial T-cells
                     protein 6-like; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:108351016"
                     /db_xref="RGD:11380980"
     CDS             3165..3968
                     /gene="LOC108351016"
                     /codon_start=1
                     /product="selection and upkeep of intraepithelial T-cells
                     protein 5-like isoform X1"
                     /protein_id="XP_038967103.1"
                     /db_xref="GeneID:108351016"
                     /db_xref="RGD:11380980"
                     /translation="MNNVLVEMIQRIVPSSRENPGINNFLFHIFPRIFQIASEIPGIN
                     FRFSLFPRSFQAASGNPVQEELLMGRSQSNAQNSNENPDEEELLMGRSQLTLQNSSVN
                     AGINDVLMQFPERNDPSSNANPGINVVVIQFPQRNDPSSNVNPGINVVVIQFPQRNDP
                     SSNANSGINDVLMQLCQRNDPSSNANPGINDVLMQLCQRNDPSSNANPGINDVLMQLC
                     QRNDPSSNANPGINDVLMQLCQRNDPSSNANPGMNYEYFTIKWSRRKLR"
ORIGIN      
        1 gccaagaagc acctaaagaa atgttcaaca ttcttggtta tcagggaatg caatctaaac
       61 aaccctgaga taccacctca caccagtcag aatggctaag atcaaaaaca cttgtgacaa
      121 ctgatactgg caatgatgtg gataaaaatg aacatttctc catttttggt gggattgtca
      181 actggtacaa ccactcttga aataagtctg tcagttcctc tgcatattgg acattgcaat
      241 acctgaggac ccacctatac ctctcctggg catataccca aaatttgctc caatgtataa
      301 caaagaattt aaaatacttc tctttctacc catagagtac ttctgctcta ggaaaatctg
      361 tcttttccag gcactgtaaa aatgtcgaat cataagagac caatttcctg aaaacaagat
      421 aattttgttt taacgtagta atttaatcgt caaccacaaa aagtgataga tataaaccat
      481 ctagaagtag agatattgtc ataaaatttc atcaaattga tataagaact gaatgaagtg
      541 ggggagagtt gttcttatct ttaagaaaac acattacttc ctacttcact ttcatgtgaa
      601 acccctaata cttattaaga aaaaaattaa aatggtcagg aagcacgcat tacttagtga
      661 tcttctgatt ctcattcctg ttattgtcta taaaaacaat aaaaaatctg gcataatgat
      721 ctttcatgga acttgtctgt aagttgaaca cagtgtagtg agaattctag aattttggtt
      781 ttattaacca acataatatt tgataagaac atgattttgt ttttctctgg tatggagata
      841 ttaggttgct ttacagtatc caaagcaatt gattatcatt ttccctatgc tctagaaggg
      901 gagtgatttt tcagctgcaa atggaatctg caaatatatg acatttacag ttatgggaac
      961 ttttcagaga acatataaat tctatgtctc tgagtaagag gtggttttgg ttgtccattg
     1021 ttgggttttt agatcttggt tgtgcttatt taacattcat gcttaagaaa aagaagaaga
     1081 aaataaatta gattacagtt tcttcttctt tgctctcaaa gttttgtact tttctgtctt
     1141 ctgtctgtta ttagactgaa tatttagtga ataaaagagg ggtggaggac gatgaaagaa
     1201 agaatattcc acaaagcaga aaagaccagc tacaagtaag gtttggaaaa tgagagaggt
     1261 tgaaagaaag aaaaacccat aaatgagcca agacaagcta caagaggcac cagaatttgt
     1321 gtataggcaa aaaggaaaat ttgatgtcaa atgccacagg cagggaaaga aagatgcatt
     1381 ttttaaaaca agaaaacaga aaacgttaat tatgtctgct gttgatgaga tattatctgc
     1441 tcagctcaca gaaggggatt ttctgtattt tctttacttc cttacaggtt ctgtttgaaa
     1501 caaggagttg gaagaaaagc tgagcagttg taaattggtg gtgagaaata gagtggtctg
     1561 agaagcaaaa catgactgaa atgggaaaac taatggggtc actctattct tttatttctc
     1621 aaaggagggc agagtttcct aaggatgtgg agacatttgc tttcctattt gaaatgtcag
     1681 ggaagtgagg aacatgagaa aagaaagagc aaaacaggtt ggtctttgtg atggagctat
     1741 cttataggag tttctcacag aaagaaggaa gaaaactctg ctgcaggctg gtggctaaga
     1801 gacagactga aaaaggagga aaatgtgaaa caaaaatcct gtttaaaaag aaagggataa
     1861 acttatctca accttgctaa cagagttaga ggagggtcaa actggggtta caatatcacc
     1921 atcagctttc atagcagtta tatccttatg tgggagcata tgcctgctga ttgtgtgaaa
     1981 aaagctatga tgacatagga tagaattata tagaaaggct agattaagac ttttgaaaga
     2041 gacaccatga ttccctatgg ggtggacttg ccttaactga aacaaattat aaataacttg
     2101 gtaatatacc actagcgtga aaaggattag aaacagcagt acaagaggct agtttgcatt
     2161 tgtaatgatt aacatggcaa ccagacaaaa ttgctctacc atgaagtaga acaaggaaat
     2221 gaagatactc agagagcatt tgctaggtga aagtcagtac tcttaaagtt ttgatacaat
     2281 ttgatcatgg taaaatacaa agaacaattt agctttgcat gtttaagatc tcagagaaaa
     2341 agttctggaa caaggaaaag ttatacctta tttacaaaga ttatacaaat tctggagaaa
     2401 gcttcattaa ttttaaattg atattggtct cagggatgaa aaaactcaca tgaaaaccag
     2461 atacaaggca agtttctatg gggaacttgg tgcttaaatg tgaatacctt acaaaataca
     2521 agatcttaga ccattaaaga cccagacagt gcctaaggag gagtaaaaag ggatacaagt
     2581 ggtattgaat ctgatatgtc tcatgctaat acacaagttc tacctatacc gagagatcta
     2641 tgatgtctac atgcctagtg atcaattaca ggaaacatgg tcatatgcaa caattttgtg
     2701 aaaaagccat tataggtctc tggactcaaa atgcttggtg atttaagtgt ggaaaatttg
     2761 ggcatttgta acaaaattgt gaacaaggca ttcttaagag agatggtact cctaggtata
     2821 aatcctaggt ataaaggtta ccctttcagg agtgttcatt tgatgaggca agggttacaa
     2881 agagaacaaa gtgtataggt gcaagagaga cacccaaggt cttttcctga cataagaaaa
     2941 tgaaatgtga gcctagcagg aggccacaca gcaaaaacaa tagcccattt tcttcttgtc
     3001 agccagaaag gaatagatag gcaaaacaag ctttatgaat taatgcaaat cttgtgtact
     3061 actttattca gtacagttta taatagataa gcatcttact ctacagcccc caaactcaat
     3121 gttataaaag taactcaata aatttatgtt cttttcccat aggaatgaat aatgtgctgg
     3181 tggaaatgat tcaaagaatt gttccaagtt ccagggagaa tccaggaata aataatttcc
     3241 tgtttcatat atttccaagg atttttcaaa ttgccagtga gattccaggg ataaattttc
     3301 ggttcagttt atttccaagg agttttcaag ctgccagtgg gaatccagtt caagaagagc
     3361 tgctgatggg aagaagtcag tcgaatgcac aaaattctaa tgagaatcca gacgaagaag
     3421 agctgttgat gggaagaagt cagctgactc ttcaaaattc tagtgtgaat gcaggcataa
     3481 atgatgtgtt aatgcaattt cctgaaagga atgacccaag ttccaatgcg aatccaggca
     3541 taaatgttgt ggtaatacaa tttccacaaa ggaatgaccc aagttccaat gtgaatccag
     3601 gcataaatgt tgtggtaata caatttcctc aaaggaatga cccaagttcc aatgcgaatt
     3661 caggcataaa tgatgtgtta atgcaattat gtcaaaggaa tgacccaagt tccaatgcga
     3721 atccaggcat aaatgatgtg ttaatgcaat tatgtcaaag gaatgaccca agttccaatg
     3781 cgaatccagg cataaatgat gtgttaatgc aattatgtca aaggaatgac ccaagttcca
     3841 atgcgaatcc aggcataaat gatgtgttaa tgcaattatg tcaaaggaat gacccaagtt
     3901 ccaatgcgaa tccaggtatg aattatgaat atttcacaat aaaatggtct aggagaaaat
     3961 tgagataaaa tttaatgcca tttgtaggaa ttctgtgtca atactctccc tagatcacta
     4021 aaaaaatctg gttcaggaca gagagaagat gtctcacaaa gtatggaaat atgtcagttt
     4081 caccagataa tggccagaaa ttagattcac tatgaaaatt atacttatga aaatgagagt
     4141 gttgattgaa atatgtacat tagagtatgt gctattcgag gaatcttgaa attcagtgtt
     4201 gacagtttaa aatgattaat cagagattag aggatgtgac aggatctcac agataaaata
     4261 agttttctat gagttaaatc agtgggacag gaaattcaag tgttttattt aaggacatac
     4321 gacaatgaca tgcccataaa cttactggga agagaatgtt cacagtcgtg aggtgcaatg
     4381 ggaaatataa aagtggtcaa ggttataata catgatgaaa tttcgtgtaa tatagagtat
     4441 actagagtct tctgcatgtg atggagttat atatgtcatg aaaatcaacc ctcgagtttg
     4501 tgaattatcc aaacacataa agaaccctga actgattcgc taaaatctat agacgaaaac
     4561 aaaattaaaa ttccaagaat gatgctttga tcatggtttc ttcacagttc cacaaggagt
     4621 agatctttgg cccttcataa agacatatga caggtgctta aaactttggt acaagaacaa
     4681 gtagattaga aatatttaga tgagaaagtc agcctttgga aatcccttct atgagataca
     4741 ttacaaaaac tttaaaaatt aagaatgtta tcagactata cagccgagta tggagtaaat
     4801 caaccaataa gtacattgca gcaacgacat tcatttcttc ttttttatcc atttgcaaaa
     4861 ccaatgggat acccctaaca gacataggct agaaagtgtt ggccaatgca gtagtagagg
     4921 ccatttaaca ttcgcaatgg ttaacatgaa aaatggacaa gggctggaac acttcaccat
     4981 gaagcagagc tagtaggatc aatgactcag agagcagttg ataggtgaag ggaagttctg
     5041 tgacatcaaa agtcagattt aatttgatga tgaaaattca atgtacaaag aacaatgttt
     5101 cactgtagct ttaagatctt gggagaaaag ttcccgacgt agtataaggt gtacctaata
     5161 tatgaaggtt acagaaaata taaagaagcg tcccatcatc ataaataaat aatgaactcc
     5221 ggggtaaaca aaatcttatg agcaccggat gaaaagaagc ttttatcaag gaatttatta
     5281 taagaaattt acaacaactt ataaaatgca atttctcagc catttgcaag cccaaaaacc
     5341 acgtctggct cagtggtacg gtgataagac tggtcttggt tctaatattt actatgatta
     5401 catattcggt cttgttatat gtagaagtgt ctattatctc catgacacct gagtactttg
     5461 caggatacat ttttatgtgc aaaattattt agaaatgtat tctggagtct catgactcat
     5521 aatgattggt gatttcaatg gagtaatttg ggcagtagaa agacagattt gaacaagccg
     5581 tccctaggag gagtagattt cctacataaa aataagagaa aaaactgtgt ctctaactgt
     5641 gttaccctag tggagtcaag tgttaccaaa cgcaatgatt gcaggtactg tcaaaacata
     5701 cgaggccttt tcgggacatt catgatatcg attgttgaaa tttttgatga gcataggctc
     5761 ccgtaaccaa acgcataggc ctactgacat tggtcaggca agatgaagtg gtaagcaaaa
     5821 cctagcacta agaattaatg catgatgatt atggcagtac tgcttatagt agtttaaagc
     5881 aaacagggtc gattctgcta cactaattat tatttcaggg atgaaaaatc cttcatgaga
     5941 atcagatgca agataggctt ttacagggaa cagattttta gcaatttgaa aaaccttaag
     6001 aaatacaagg ggttagacaa cgaaatgccc agaaaccatc cctcagtgac tctacactga
     6061 tgacaccttt ctaattttta atactgttca ggttaacata ttaggtactg ctttacttag
     6121 aagtatctgc tatctgtatg acacctaagt gaattgcagg acaaatggtc atgtgcaaat
     6181 tatttagaac agaaatttat aggtctgttg aatgaaagtg attcgttatt ttaaaggaat
     6241 agtttgagca gtggaaagac aatttggaat aggccaacca taggaggagg gtttttctac
     6301 atataaaata aaataaagag gacaaagcct gtgactccag gtgtgtaact ttgatgagtc
     6361 aagttgaaac aatgattgta ggaccaagag aaaaacataa gacctttggg tgacatcaaa
     6421 agttgacagt catgaccagc ctagggccac acctcttgac tttggttagc caagaaggaa
     6481 tagtgagcca aatctagcaa tacgaattag ggaaaatgta atgcatgatg tttaggcagt
     6541 acttcttata cttttctaaa ggatagcttt ttaagcacaa aagcaaactg aatgttataa
     6601 agtcactaat tgaactaatg atcttaatcc cttacgcata aatgatgtgt taatgcaatt
     6661 ctgtcaaagg aatgacccaa gttccaatgc gaatccaggt atgaattatg aatatttcac
     6721 aataaaatgg tctaggagaa aattgagata aaatttaagg ccatttgtag gaattctgtg
     6781 ccaatactct ccctagatca ctaaaaaaat ctggttcaga acagagagaa gatgtcttac
     6841 aaagtaggga aatatgtcag tttcaccaga aatggccaga aattacattc actatgaaca
     6901 ttatacttat gaaaatgaga gtgttgattg aaatacgtac attcgagtat gtgctattcg
     6961 aggaatcttg aaattcagtg ttgactgttt aaaatgatta atcagagatt ggaggatgtg
     7021 acaggatctc acagataaaa taagttttct atgagttaaa tcagtgggac aggaaattca
     7081 agtgttttat ttaaggacat acgacaatga catgcccata aacttactgg gaagagaatg
     7141 ttcacagtcg tgaagtgcaa tgggcaatag aaaagtgatc aaggtcataa tacatgatga
     7201 aatttcgtgt aatatagagt atactagagt cttctgcatg tgatggagtt atatatgtca
     7261 tgaaaatcaa ccctcgagat tgtgatttat ccaaacacat aaagaaccct gaactgattc
     7321 gctaaaatct atagaaggaa acaaaattaa aagtccaaga atgatacttt gatcatggtt
     7381 tcttctcagg tccacaaagt gtagatcttt ggcccttcat aaagacatat aacaggtgct
     7441 taaaactttg gtacaagaac aagtagatta gaaatattta gatgagaaag tcagcctttg
//
