LOCUS       XM_039108499            2042 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L29 pseudogene
            (LOC108350852), mRNA.
ACCESSION   XM_039108499
VERSION     XM_039108499.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2042
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2042
                     /gene="LOC108350852"
                     /note="60S ribosomal protein L29 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 3 Proteins, and 97% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108350852"
                     /db_xref="RGD:11435887"
     CDS             1572..2042
                     /gene="LOC108350852"
                     /codon_start=1
                     /product="60S ribosomal protein L29-like"
                     /protein_id="XP_038964427.1"
                     /db_xref="GeneID:108350852"
                     /db_xref="RGD:11435887"
                     /translation="MTKSKNHTTHNQSCKWHRNGIKKPRSQRYESLLGVDPKFLRNMR
                     FAKKHNKKGLKEMQANNAKAVSARAEAIKALVKPQAVKPKMPKGSSRKLSRLAFITHP
                     KLGKKIRSYMAKGRRLCQPKPKVQTKAEAKVPAKAQASVPAQAPKGAQAPVRAP"
ORIGIN      
        1 aagaatcagt taagaatgct tgctgtttcc atcttatcta attgggtggc tgtgtatgta
       61 ccacatcaac ttttaacctg gactccagtg atgaagcttg cactgtctgg cttgtgccaa
      121 aagtccttta tctactgacc catcttgaca gctgttattc atttctttgg cttttgttgt
      181 tgttgttgtt tgttttgttg tttttttgtt ttgagacaga atttgctatg acctccaact
      241 tcctatacgg cccacactag cacgaaactg gtctgccaac ctcagtctcc agatatgccc
      301 catgacaccc aacctttatc acctggtgtt agctcctggt ttcctactac cagactgtcg
      361 tagtccttca gataccgtgt acccctgcta tttccatgcc acactcatcc atacatgtgt
      421 gtgctcacag catctgtgtt atgcatttct aatttcctgt tcaggttgga gacagtcgag
      481 aactcatcag ttaagaatgc ttgctgtttt tgcagaggat ctgggtttga gactcaaaac
      541 ccacatggca ctgcactgtc tgtaactcca gttccagggg atttactacc tctaattgcc
      601 tctcagtgta tcaggacagc ccacagtaca catacacaca tgtaggcaag acactcgtat
      661 acatcaaaca aaaataagcc tttaaaaaca agaattatag catcagatca ttttctgggt
      721 cttctagaaa tcatcatccc caccgtttga ggaaacctta gagctttcag ccatcagtat
      781 cttcaattag ggccatacat ttttagtatc aaaaatttaa gacgcggctt gcaagaaaac
      841 ctaatgaatg aagatacata tgtcttagct ctaggactct caaggggaga gtcaatcaca
      901 ttaggagttg gcatctctat cagcctctgt gctttctgtg tcttccacag ggcaggtcta
      961 gggttatctt tacgtcagat acttggttag cagtgggtga attggaggta tcttactctt
     1021 tataaaaaaa cacattgaaa acttctcctc tgcttattaa aaaggttttt tttaaattat
     1081 gtgtatttgt gtgcacacat atgggggtat gtgctcatga agccagaagc cagttgaatg
     1141 cttggaagct ggagttatag gtgattgtga accgcctgat agagacgctg agagttgaac
     1201 ttgggtctct gcaggaccaa tacacgctct tacctgctgc gctatctccc atctgctctc
     1261 tgctaccact gaagtctaaa gttgggccaa aagttggata aaactatgaa aaattatgtt
     1321 tttttcccat tttacttctt atttactttc ttgactcttt gactcataaa agtgatgaga
     1381 taagggaaca tatgtagatt acaaggcaac tgcatacatt ttccccaaat agaacaaact
     1441 tcatagcagt ttatcctccc tcaaagagtt ggaaaccaag actcaaggac ggcactacac
     1501 aaatcaaaaa caaattgtat ttttctcttc cggtcccagg cactgcagga gccgcggctt
     1561 accatgcaga catgaccaag tccaagaacc acaccacaca caaccagtcc tgcaaatggc
     1621 acagaaatgg catcaagaaa ccccggtcac aaagatacga atctctgttg ggggtcgacc
     1681 ccaagtttct gaggaacatg cgctttgcca agaagcacaa caagaaaggc ctgaaggaga
     1741 tgcaggccaa caatgccaag gcagtgagtg cacgagcaga ggccatcaag gccctcgtga
     1801 agcctcaggc cgtcaagccc aagatgccca aaggctccag ccgcaaactc agccgtctgg
     1861 ctttcatcac tcaccccaag cttgggaaga agattcgaag ctacatggcc aagggtcgta
     1921 ggctctgcca accaaagccc aaggttcaaa ccaaggcaga ggccaaagtt ccagctaagg
     1981 cccaggcttc agttccagcc caggctccca agggtgccca ggcccctgtg agggccccat
     2041 ag
//
