LOCUS       XM_039108601             646 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L31 pseudogene
            (LOC108350671), transcript variant X1, mRNA.
ACCESSION   XM_039108601
VERSION     XM_039108601.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..646
                     /gene="LOC108350671"
                     /note="60S ribosomal protein L31 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 27 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 16 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:108350671"
                     /db_xref="RGD:11431277"
     CDS             262..636
                     /gene="LOC108350671"
                     /codon_start=1
                     /product="60S ribosomal protein L31-like"
                     /protein_id="XP_038964529.1"
                     /db_xref="GeneID:108350671"
                     /db_xref="RGD:11431277"
                     /translation="MAPAKKGGEKKGRSAINKVVTREYTINIHKRIHGVGFKKRAPRA
                     LKEIQKFAMKEMGTPDVHIDTRLNKAVWDRGIRNVPYRIRVRLSGKRNEHEDSPNKLY
                     TLVTYVPVTTFKNLQTVNVDEN"
ORIGIN      
        1 cggggagcaa ggggaagaca agactgagaa aagaaaccag cttggagggc atcgcaggaa
       61 cttcaattat ccgagctctg ttccttcaat gctttgaaaa caatactccg gaagccggaa
      121 gtgtcggagc ttccggttgg tttcccactg gtggtgtgcg gtcgtgcctc tcaggcaaag
      181 catggctaaa agcttgcaag ggaacaagtg ttgctttaaa gttggcagaa aaagcttcct
      241 ttccaacttg ggctcggcag aatggctcct gcaaagaagg gtggcgagaa gaagggccgg
      301 tctgccatca acaaggtggt gacccgagaa tacaccatca acattcacaa gcgcatccat
      361 ggagttggct tcaagaagcg tgctcctcgg gcgctcaaag aaattcagaa atttgccatg
      421 aaggagatgg ggactccaga tgtgcacata gacaccaggc tcaataaagc cgtctgggac
      481 agaggaataa ggaatgttcc gtaccgcatc cgagtacgtt tgtccggaaa gcgtaatgag
      541 catgaggatt caccaaacaa gctctacaca ctggtaactt acgtgcctgt taccacattc
      601 aaaaatctac agacggtcaa tgtggatgag aactaactgc tgaatg
//
