LOCUS       XM_039106594             449 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus small nuclear ribonucleoprotein F-like
            (LOC108350623), mRNA.
ACCESSION   XM_039106594
VERSION     XM_039106594.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106594.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..449
                     /gene="LOC108350623"
                     /note="small nuclear ribonucleoprotein F-like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108350623"
                     /db_xref="RGD:11410735"
     CDS             1..273
                     /gene="LOC108350623"
                     /codon_start=1
                     /product="small nuclear ribonucleoprotein F-like"
                     /protein_id="XP_038962522.1"
                     /db_xref="GeneID:108350623"
                     /db_xref="RGD:11410735"
                     /translation="MGVRNEFALNPKPFLNGLTGKPVTVRLKWGMEYKDYLVSIDGYM
                     DTQLANTEEYIDGALSGHLGEVLIRYSNVLYVRGIEEEEEDGEMRE"
ORIGIN      
        1 atgggtgttc gcaatgagtt tgccctcaat cccaagcctt ttctgaatgg actgacagga
       61 aagccagtga cggtgagact taagtggggc atggagtaca aggactacct ggtctccatt
      121 gatggctaca tggacacgca gcttgcaaat acagaagaat acatagatgg ggcattatct
      181 ggacatctgg gtgaagttct aataaggtat agtaatgtcc tctatgtcag aggcattgaa
      241 gaggaggagg aagatgggga aatgagagaa taacatcttg gggaaatata tatatgtata
      301 tatatatatt tttttctata cagtaaagac ttgtgttttt tctttttcaa aaaaaaaaaa
      361 gaattcaacg tcaccttaat acatacaagt tggggacttc tatggaaagg ttgataagac
      421 acaaaacata ccatttacgt gctctgttc
//
