LOCUS       XM_039106580            1359 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus copine-8 pseudogene (LOC108350561),
            mRNA.
ACCESSION   XM_039106580
VERSION     XM_039106580.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106580.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1359
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1359
                     /gene="LOC108350561"
                     /note="copine-8 pseudogene; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 Protein, and 98% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108350561"
                     /db_xref="RGD:11409438"
     CDS             1..465
                     /gene="LOC108350561"
                     /codon_start=1
                     /product="copine-8-like"
                     /protein_id="XP_038962508.1"
                     /db_xref="GeneID:108350561"
                     /db_xref="RGD:11409438"
                     /translation="MFIIRKTVINHVARYASSVKDGSQYFVLLIVTDGVISDMAQTKE
                     SIVNASKLPMSIIIVGVGPAEFDAMVELDGDDVRVSSKGKYAERDIVQFVPFRDYIDR
                     SGNHILSMARLAKDVLAEIPEQFLSYMRARGIKPSPAPPPYTPPTHVLQTQI"
ORIGIN      
        1 atgtttatta taagaaaaac cgtaataaac cacgtagcaa gatatgcatc ctctgtaaaa
       61 gatggctccc agtactttgt gctcctcatt gtgacggacg gcgtcatctc agatatggct
      121 cagactaaag aatccatagt gaacgcctcc aagctcccca tgtcaataat tatagtaggt
      181 gttggccctg cagaatttga tgcaatggtt gaactggatg gggatgatgt gagagtttcc
      241 tccaaaggga aatatgccga aagagacatt gtacagtttg tgccattcag ggattatatt
      301 gaccgaagtg gaaaccacat cctgagcatg gctagactgg ccaaagatgt cttagctgag
      361 atccctgagc agttcctctc ctacatgaga gccagaggaa ttaagccatc gcccgcacct
      421 ccgccctaca cccctcccac acacgtgctg cagacgcaga tatgaccgca tcctgatgcc
      481 gacgtccctc acacgccagt cagaactgcg aagcctgttc tttgatcctg gtgctctgct
      541 atgaaccagg gaaggggact ttctcagcgt ggtttcagca gtactgggga aaatgtgctt
      601 tcttggatcc aaaattaatt ctcttcctaa accaaaactg taaatatggt tgttgcatga
      661 gcaaccgggg aaataatggt ttaaatgctt gaagcgaagt agagatgtct tctctaattt
      721 ttgaatattt tttttgtttt gttctcgacg gaatagtcca tttccaatgt attattggga
      781 aaaagcacaa gctacgtttt taacacaaat gttgtccttg actgctacat atataggccg
      841 gcagtctcgg tgtcgatgtt tacacgttac tactttttaa atttcaatac ttttataact
      901 gttcttaaga ctaagtttta aatattgaat cctttgtctt ctaaattgca atagctataa
      961 ccacaggagc aacatctctt tgaatgaatg tctggacact tgcagtatga gtgagggaag
     1021 agaaggaggt agatcactaa ggcaatctcc ttcacgatta atacccgtca tcagttttgg
     1081 ccaatagcgg gagtttctat ttataaacag atgaggccct gtaatatgca tcttttcatg
     1141 gcctttgggt ttaaatttag actgcggtca atttgtcttt cgcaatgcaa actagaagca
     1201 acaaacaggc aaacatcgtg aactgttaat gcacagaata cacgttgtat caaaaccacc
     1261 atccttacga tgctatcatt taatgagtaa aaccaagact gtaactccaa accatgtagc
     1321 aggtattttg aaccttgtat tacgttgtat cctgtctag
//
