LOCUS       XM_039106766             780 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L34 pseudogene
            (LOC108350542), mRNA.
ACCESSION   XM_039106766
VERSION     XM_039106766.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106766.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..780
                     /gene="LOC108350542"
                     /note="60S ribosomal protein L34 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 long SRA read, 24 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108350542"
                     /db_xref="RGD:11502284"
     CDS             281..700
                     /gene="LOC108350542"
                     /codon_start=1
                     /product="60S ribosomal protein L34-like"
                     /protein_id="XP_038962694.1"
                     /db_xref="GeneID:108350542"
                     /db_xref="RGD:11502284"
                     /translation="MNRFFLFRGRCLGALRMVQRLTYRRRLSYNTASNKTRLSRTPGN
                     RIVYLYTQKVGKAPKSACGVCPGRLRGVRAVRPKVLMGLFKTKKHVSRAYGDSMCAKC
                     VRDRIKPAFLIEEQKIVVKVLKAQARSQKAKKMGDLF"
ORIGIN      
        1 ctcaggagtc cttttgggtt attcagagag taaaacatgg cttatgctgg gcagagctgt
       61 tgctgggctg ccgcttgctt tctgtgtctc ctgggctatc tctttgcatg cccatttcta
      121 agaagtacac tgagtcacct gttggaggcg gcagggcctg atctcagctt accacctgtg
      181 cccggaaaca ctaggtgctg cacaagagga tgtctacaca gtaatgtcta cacgtgtgct
      241 ttttgctggt attaacattt gaatgtcatt ttaagatacc atgaatcgtt tcttcctctt
      301 ccggggacgg tgcttagggg cactcaggat ggtccagcgt ttgacatacc gtcgtaggct
      361 ttcctacaat acagcctcta acaaaactag gctgtctcga acccctggca acaggatcgt
      421 ttacctttac acccagaagg ttgggaaagc acctaagtcc gcgtgtggcg tgtgcccagg
      481 cagactgcga ggggttcgtg ctgtgagacc caaagtcctc atgggattgt ttaagacaaa
      541 gaagcacgtc agcagggcct atggtgactc catgtgcgcc aagtgtgtcc gtgacaggat
      601 caagccggct ttccttattg aggagcagaa aatcgtcgtg aaagtgttga aggcacaagc
      661 ccggagtcag aaagcaaaga aaatgggtga ccttttttaa gtaataaaaa tcaagacttg
      721 gtcaaaaaaa aaaagatacc ataaatctgg ggttggggat ttagctcagt ggtagagcgc
//
