LOCUS       XM_039106862            1111 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 40S ribosomal protein S2 pseudogene
            (LOC108350502), mRNA.
ACCESSION   XM_039106862
VERSION     XM_039106862.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1111
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1111
                     /gene="LOC108350502"
                     /note="40S ribosomal protein S2 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 41 ESTs, 139 long SRA reads, 24 Proteins, and 96%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:108350502"
                     /db_xref="RGD:11403788"
     CDS             193..621
                     /gene="LOC108350502"
                     /codon_start=1
                     /product="40S ribosomal protein S2-like"
                     /protein_id="XP_038962790.1"
                     /db_xref="GeneID:108350502"
                     /db_xref="RGD:11403788"
                     /translation="MADDAGAAGGPGGPGGPGLGGRGGFRGGFGSGLRGRGLGRGRGR
                     GRGLGARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASL
                     KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK"
ORIGIN      
        1 attcccaagg tgtactatat tcacagatgg tctaagaaac atagaggagg tggtggggag
       61 tgtcaagaag gaaactgcac tacttcttcc tcttcctctt cctcttcctc ttcctcttcc
      121 tcttcctctt cctcttcttc ttcttcttct tcttcttctt cttcttcttc ttcttcttcg
      181 ggaaaacacc aaatggcgga tgacgccggt gcagcgggag ggcccggagg acccgggggc
      241 ccaggattag gaggccgcgg cggcttccga ggaggattcg gcagcggcct taggggccga
      301 ggtcttggcc gaggccgtgg ccgcggtcga ggcctcgggg ctcgtggagg taaagctgaa
      361 gacaaggagt ggatccccgt caccaagctg ggccgcctgg ttaaggacat gaagatcaaa
      421 tccttggagg agatctacct gttctccctg cccattaagg agtctgagat tattgacttt
      481 ttcctgggtg catctctaaa ggatgaagtt ctgaaaatca tgccagtgca gaagcagact
      541 cgggctggcc agcggaccag gttcaaggcc tttgtcgcta ttggggacta caatggccac
      601 gttggtcttg gtgttaagtg atccaaggag gtagccactg ccatccgagg ggccatcatc
      661 ctggccaagc tttcgatcgt cccagtgcgg agaggctact gggggaacaa gattggcaag
      721 ccccacactg tgccatgcaa ggtgacaggc cgctgtggct ctgtgctggt tcgtctcatc
      781 cctgccccca gaggcactgg cattgtctct gctcctgtgc ccaagaagct actgatgatg
      841 gccggtatag atgactgcta cacttcagcc aggggctgca ctgccaccct gggcaacttt
      901 gccaaggcca cctttgatgc catctccaag acctacagct acctgacccc tgacctctgg
      961 aaagagactg tgttcaccaa gtctccttat caggaattca ctgaccatct tgtgaaaacc
     1021 cacaccagag tctctgttca gaggacccag gctccagctg tggctaccac ataagggttt
     1081 ttatacaaga aaaataaatg aattaagtct g
//
