LOCUS       XM_017592216            2099 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus zinc finger and SCAN domain-containing
            protein 29-like (LOC108350448), mRNA.
ACCESSION   XM_017592216
VERSION     XM_017592216.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017592216.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio   :: 19% of CDS bases
            frameshifts :: corrected 2 indels
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-208               JACYVU010000118.1  32001279-32001486   c
            209-336             JACYVU010000118.1  31998809-31998936   c
            337-393             JACYVU010000118.1  31998751-31998807   c
            394-394             "N"                1-1
            395-2099            JACYVU010000118.1  31997046-31998750   c
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2099
                     /gene="LOC108350448"
                     /note="zinc finger and SCAN domain-containing protein
                     29-like; The sequence of the model RefSeq transcript was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 86% coverage of the annotated genomic
                     feature by RNAseq alignments, including 40 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:108350448"
                     /db_xref="RGD:11507574"
     CDS             1..1062
                     /gene="LOC108350448"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon;
                     deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: zinc finger and SCAN
                     domain-containing protein 29-like"
                     /protein_id="XP_017447705.2"
                     /db_xref="GeneID:108350448"
                     /db_xref="RGD:11507574"
                     /translation="MDALVSAQVAAPPSNDQDKETASCCLQRTSEAEPEKQDDDTEDS
                     DDEGDTEIPQGAVTTHAPALAHNPSGFKAGFDNEENSKRDISEEVQLHRTLLARSERK
                     IPYHVNQSKSSKNECSSESQWEKTKREKKXQLAFPEKSIGKVPTYQRPGLEDRPYKYL
                     RYSKSFGSNSHLMYQFSYEVENPYKCADCGISFSRSVRLIRHQRIHTGEKPYKCLDCG
                     KGFRDSSNFITHRRIHTGEKPYQCGECGKRFNQSSSLIIHRRTHTGEKPYQCEECGKS
                     FSNSSHFSAHRRTHTRKRPHVCPDCGKSFSKSSGLRAHHRTHTGEKPYGCHDCGKCFS
                     KSSALNKHREIHTREKLLP"
ORIGIN      
        1 atggatgctt tggtgagtgc ccaagttgct gccccaccta gtaatgacca ggacaaagaa
       61 acagcttctt gctgcctcca gagaaccagt gaggctgaac ctgagaagca agatgatgac
      121 acagaagatt cagatgatga aggtgatact gagatacctc aaggggctgt tacaacccat
      181 gccccagcct tagcccacaa tcccagtggt ttcaaggctg gatttgataa tgaagagaat
      241 tcaaaacggg atatttctga ggaagtgcag ctgcatagga cattacttgc aaggtctgaa
      301 aggaaaattc cctatcatgt taatcaaagt aaatcaagta agaatgaatg ttcatcagaa
      361 agccagtggg aaaagactaa gagagaaaaa aaangacaac tggcattccc agagaagagt
      421 ataggtaaag tcccaactta ccagagacca ggcttggaag acagacctta taaatacctc
      481 aggtatagca aaagctttgg ctcaaactca catctcatgt atcagttctc ctatgaggta
      541 gagaacccat ataaatgtgc tgactgtggg ataagcttca gtcggagtgt acgcctcatc
      601 agacaccaaa gaatccatac tggagaaaaa ccatataagt gccttgactg tgggaaaggt
      661 tttcgtgaca gttccaattt cattacccat cggagaatcc acactggtga aaaaccttat
      721 cagtgtggtg aatgtggaaa acgcttcaat cagagctcaa gccttataat tcaccggaga
      781 actcacacag gagaaaagcc ttatcagtgt gaagagtgtg ggaaaagctt cagtaacagt
      841 tcccatttca gtgcacatag gaggacacac acaagaaaga gaccccatgt gtgtcctgac
      901 tgcggtaaga gtttcagtaa gagttctggc ttacgtgcac atcacagaac ccacacagga
      961 gagaaacctt atgggtgcca tgattgtggc aagtgcttca gtaagagctc tgcccttaat
     1021 aaacaccgag agattcatac acgagaaaag ctgctgccat agtcagtgct taagtaagct
     1081 cctgaggaag ggcctcagta gatggacact tgcaaagtcc tttcctgttt tgtacccagc
     1141 tggcttagga agcactcctt gggatttctg ccactttatt tcttatcctt tccagatcta
     1201 gatgaggcca atgccagttg gttcaagatt aaaaagtaga ttttgatctg aacagatggt
     1261 aatacctctt ccctctcagt ttctgtattg tttcctgaga gaggatatgg tggtatatgc
     1321 tgtgggtctc acgtatatcc ttcactcaca ttgtcattta gcgcacatca attgaaaaac
     1381 cagtttcagc agtttttcaa gaagctctga gacttgggcc attttgctca cttaaacctg
     1441 tgtacactct tcatttatct ttaaaaagag tttaaagtcc atcttggttc tatcttttcc
     1501 ccagaatctg gggctaggga tatagctaag tggtagagca cttgcctagt atgtataagg
     1561 ccctgggctc aaacctcaca cacacacaca cacacacact aactcactcg tgtagggaat
     1621 gggggcagat cgagagcaaa acaatgtaag ttttctataa acactgaatt tcttagtttc
     1681 ttccagattc tacaaggact ctggaagtat attctacaac agaatatact gcatttatag
     1741 gtcttgattt ttctcctttc tttttcctcc tctccgtcta aatgccatct gtctcttgta
     1801 gactagcggt caaaagagca aactagaggt ggggtaatag aaaaagtagt taaagctgtc
     1861 agcaggagtc atctgtttct cctgcactcc acatatctag tataaagtca tgcagcctat
     1921 gggtgctcaa tactaattgc aagaagcaga accatttccc caattatagg ttgtagcgcc
     1981 caccctgacc agcaaggaag atgcaacacc gtcagattct tctcaacagc ctttattgca
     2041 ggaacaccta attgttaata cagggacccc gaggaacaaa ggcacttgcc ttaaataca
//
