LOCUS       XM_039103356             565 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L21 pseudogene
            (LOC108350290), mRNA.
ACCESSION   XM_039103356
VERSION     XM_039103356.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103356.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..565
                     /gene="LOC108350290"
                     /note="60S ribosomal protein L21 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 17 Proteins, and 83% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108350290"
                     /db_xref="RGD:11410644"
     CDS             23..505
                     /gene="LOC108350290"
                     /codon_start=1
                     /product="60S ribosomal protein L21-like"
                     /protein_id="XP_038959284.1"
                     /db_xref="GeneID:108350290"
                     /db_xref="RGD:11410644"
                     /translation="MTNTKGKRRGTRYMFSRPFRNHGVIPLATYIRIYKKGDIVDIKG
                     MGTAQKGMPHKCYHGKTGRAYNVTQHAVGIIVNKQVKGKIPAKRINVRIEHTKHSKSR
                     DGFLKRVKENDQKKKEAKEKGTWVQLKRQPVPPREAHFVRTNGKEPELLERSPYEFMA
                     "
ORIGIN      
        1 catcttccag taactcacca aaatgacgaa cactaaagga aagaggagag gtactcggta
       61 tatgttctct aggcctttta ggaatcatgg agtcattcct ttggccacat acatccgaat
      121 ctacaagaag ggtgatattg tagacatcaa gggaatgggc actgctcaaa aaggaatgcc
      181 ccataagtgt taccacggca aaactggaag agcctacaat gtcacccagc atgccgtggg
      241 catcattgta aacaagcaag ttaaaggcaa gattccggcc aagaggatca atgtgcggat
      301 tgagcacacc aagcactcaa agagcagaga cggcttcctg aagcgggtga aggagaacga
      361 tcagaagaaa aaggaagcca aagagaaggg cacctgggtt cagctgaagc gccagcctgt
      421 gcctcccaga gaagcccact ttgtgaggac taatggaaag gagcctgagc tgctggagcg
      481 cagtccatac gaattcatgg cctaatgtat acaaaggaaa taaagaacct ggactgcaaa
      541 aaaaaaaaaa aaaaaaaaaa aaaaa
//
