LOCUS       XM_039104065             514 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L21 pseudogene
            (LOC108350287), mRNA.
ACCESSION   XM_039104065
VERSION     XM_039104065.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104065.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..514
                     /gene="LOC108350287"
                     /note="60S ribosomal protein L21 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 16 Proteins, and 35% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:108350287"
                     /db_xref="RGD:11427815"
     CDS             1..483
                     /gene="LOC108350287"
                     /codon_start=1
                     /product="60S ribosomal protein L21-like"
                     /protein_id="XP_038959993.1"
                     /db_xref="GeneID:108350287"
                     /db_xref="RGD:11427815"
                     /translation="MTNTKGKRRGTWYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKG
                     MGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKIPAKRINVWFEHIKHSKSR
                     DSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPSPYEFMA
                     "
ORIGIN      
        1 atgacgaaca caaaaggaaa gaggaggggt acttggtata tgttctctag accttttagg
       61 aaacatggag tcgttccttt ggccacatac atgcgaatct acaagaaggg tgatattgta
      121 gacatcaagg gaatgggcac tgttcaaaaa ggaatgcccc ataagtgtta ccatggcaaa
      181 actggaagag tctacaatgt cacccagcat gccgtgggca tcattgtaaa caagcaagtt
      241 aaaggcaaga ttccggccaa gaggatcaat gtgtggtttg agcacatcaa gcactcgaag
      301 agcagagaca gcttcctgaa gcgggtgaag gagaacgatc agaagaaaaa ggaagccaaa
      361 gagaagggca cctgggttca gctgaagcgc cagcctgcgc cacccagaga agcccacttt
      421 gtgaggacta acggaaagga gcctgagctg ctggagccca gtccatatga attcatggcc
      481 taatgtacac aaaggaaata aagaacctgg actg
//
