LOCUS       XM_039103818            5389 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 60S ribosomal protein L21 pseudogene
            (LOC108350082), mRNA.
ACCESSION   XM_039103818
VERSION     XM_039103818.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103818.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5389
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5389
                     /gene="LOC108350082"
                     /note="60S ribosomal protein L21 pseudogene; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 6 ESTs, 16 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:108350082"
                     /db_xref="RGD:11383150"
     CDS             1933..2415
                     /gene="LOC108350082"
                     /codon_start=1
                     /product="60S ribosomal protein L21"
                     /protein_id="XP_038959746.1"
                     /db_xref="GeneID:108350082"
                     /db_xref="RGD:11383150"
                     /translation="MMNTKGKRKGTQYMFCRPFRKHGVVPLVTYMRIYKKGDIVDIKG
                     MSTVQKGMPPKCYQDKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVWIEHIKHSKSR
                     DSFLKRVKENDQKKKEAKEKGTWVQLKHQPAPPREAPFVRSNGKEPELLEPIPYGLMA
                     "
ORIGIN      
        1 aaggaagggc tgtctttttc ctcagtagga gtgggtagtt gctcctgtct cagtaaataa
       61 ctgctttttg tgtaagcaat cctaattaaa ttctggctta ccccccaccc ccaataaagg
      121 cattaacata ggaagaagag ttattgggaa gaagggcatc agcaggagag agggtgacag
      181 gggatgaaaa tgccccaaac tccacggtgt taggtgtgaa ttgacaaaag tttttttgtt
      241 tttggttttt tttttttaaa gtgacacaaa atgcaaaagc actgcttcgt gatgaaatta
      301 tcactttagg atggtatttc atagtatcaa ctatgcatag tttcatcttc agaatattac
      361 aaaggaattt tcattagata tagattcttg tatgttgacc acatagaatt tgtaagcaaa
      421 gatagatttt tataactgta atcctaaaca aactacttag aactgaaatt agacatctac
      481 gacatattct ttgcaaaggg atgcaattct tctagttgta tattcctcac caagaaaact
      541 taccattctc attttaggtt tgagaagtcc cagagggtct cgttgcagcg tttgccaaca
      601 ggaagcaagt gtgcatgctt ttagttgtct accacctaga gatacttaaa gaggttctga
      661 ggggaaagtt tagggactca tgtttaaatg ataagctacg ttcccttatt cccccagatg
      721 aaaataactt taaaaggcag aaaatactgt agttttcatg aatctaaggg ctggaactgt
      781 tttaaatttt attattacct tttgtttgtt tgtttttgtg gtggtatgga ttgatctagg
      841 cacatgctac ataagcattc tacctttgag ctaaagcccc agccccagcc tcatcctcag
      901 ccccagagtg ggtgttttag cggacatggc tctgtacagg cttaggaagt gaaagctaga
      961 acaactacca caacctattt ctgtcatgag gtccattact aaactcttgg ggttggctac
     1021 attgtcttgg agacatacag gtagaacact aactcagcct gttaggaaaa atagctcatc
     1081 atgtgtgtct atgtggcccc cccaacccta gacaactaca aggaaaatga aatgagttga
     1141 agtggtgggg gaggttggga ggggagcagt tactccctga tattttatag ttataacctt
     1201 atctctgtga gatttacatc tctaagtcag tttgtgaata gttgtaagat aaaaatgaaa
     1261 tatggtttac agtaactcca gccagagata gcccttgaca gaagcaaatg catgtcatag
     1321 ttttaaaaaa aaaattcctc agttcaaaaa gaaaaaagat actgaaaaca aggaccaacc
     1381 acaacaacag atggctcaat tggatcctcc cactgacttt ataccttatc atttttatat
     1441 gtagaccagc atgtttagga aattttaaat taaaatatca gaatggcagc attatgatac
     1501 ttagtattgt agaactttct atgaatctct caatattcta atccttaata catattaatt
     1561 cagtcagttc tcacaactgt gaaacagtgg ccacttatta taggtgaata actgaagcac
     1621 aaaatgagga agtaacatgg gcaaggttag tagatgagac agtgtttcta gctgttttta
     1681 actgtttcac tgtgctatgt aagaacaaga aaatgagatg atgaagtatt gctattagcg
     1741 ttgaagggaa aacaatttag aaactaaata tgtgtttata aatatataca tttgttatat
     1801 aaaaatatat ttgtataaat aaaattaagt ttaaacggac aatttacact caaactagtg
     1861 agcaagaaac tgatctgaaa aataggttaa ctgctttcca ccggggaagc catcttccag
     1921 taactcacca aaatgatgaa tactaaagga aagaggaaag gtactcagta tatgttctgt
     1981 agacctttta ggaaacatgg agttgttcct ttggtcacat acatgcgaat ctacaagaag
     2041 ggtgatattg tagacatcaa gggaatgagc actgttcaaa aaggaatgcc ccctaagtgt
     2101 taccaagaca aaaccggcag agtctacaat gtcacccagc atgccgtggg catcattgta
     2161 aacaagcaag ttaaaggcaa gattctggcc aagaggatca atgtgtggat tgagcacatc
     2221 aagcactcaa agagcagaga cagcttcctg aagcgggtga aggagaacga tcagaagaaa
     2281 aaggaagcca aagagaaggg cacctgggtt cagctgaagc accagcctgc gccacccaga
     2341 gaagccccct ttgtgaggag taacgggaag gagcctgagc tgctggagcc cattccatac
     2401 ggactcatgg cctaatgtat acaaaggaaa tgaaggacct ggactgcaaa aaaaaaaaaa
     2461 aaaaaaaagt aaagaaaaga aagaaagaaa aaaaataggt taactgaaaa agacaaggat
     2521 agaaaaatgt aagaaaatat ttgaaattat ggcagaaaaa aatgcttttc ctgatgcttg
     2581 tccctctagt agtgagtggt gggtgtgctg actgaacgct ttgctgtcta gccagcactt
     2641 ccatgccatt gccttctaac aagtgaattc tgtccgtatg ataagctctg agcaattggg
     2701 gatactagtg caaaactgca acttctaggt catgaataag gagaaaacgt attacttttt
     2761 tttcttgtct tccatcccgt ggacgaaaag aatgtaatgt ggttggtgag ctattgtggg
     2821 gggttaaggg ttgtatgaaa gtagtgcttt aaggatgaca cagtaagata taaaagttcg
     2881 gctcgcatat ttctaacctg ctaaagaagc cctagactat atgagtgggg gtgggaggct
     2941 tgagtcgtcc cttagatgat agatgctctc attagagcag cttagtctcc atcctaatac
     3001 aggaagaggt ttagcagttg tctgatcaga attccaggta agaggaaaat caaatagaga
     3061 taatatttaa ggagattaag atttcatatt tccaaagtac taaatagaca ccagttgaag
     3121 acattagatc ctaagcaagc taaatagaga tctaagccta agcactcagt taaaaccaca
     3181 gtcagaatag ccagaggggg aaactttcca aagagctgcc attacagcag ctgacttagt
     3241 gaaaggaaaa tagaaaccca ggcaataggc agtgtactga gggctcatct actaaagctg
     3301 aagtgtcttc caacagtagt ggtaatgaag agcagcaaag cctttaaaac aaaaactgaa
     3361 tatcctaaga aaagatcaca gaaggtaaga tgcagagata aatactcctc gatgcttgat
     3421 gaggagtgca ttattagaga aggggccaaa catggtggca tatcctataa cctcagcatt
     3481 tgggtactgg aggagaagaa ttgctatgaa taggtcagcc tacactacag agcaaaacaa
     3541 tcatgaacac tctagcagtt catgtttgct gaggaagggg agactttctt cagtggtgta
     3601 gccttctcct gtacccctat aaccagtcct aactacagtc agtgggttga aaagaataaa
     3661 tacatcaata aaaaaaatgt ggtggacaaa aatatgagag aaagagattg aaattgtatt
     3721 aggagtcttt agaggaataa aactaataga agaatatata ctataaaaga gactgactag
     3781 attggtttgt atgatacatg gtatgcagtc cagctatgtc tgtttaggta ttggagaggg
     3841 cgagagcctt atagctgatc aatctagaag ggttgaccca acttgtcact gaaggcctag
     3901 aagattcctg aagagcccct ggtcttcagt ccatgtagaa gtccaagagg ctgagttcca
     3961 atgccatgtc caaggatgac agtggcagtc tgtgtatcgg ctagcgaggg gcaaaggcga
     4021 gcaggtaaga agcaaccgtt ttgaacctct gtacatctga gcccctgctg gcaggtactg
     4081 tccacttcaa gggaaggagg attcctccct tgcttaatcc ttctaggaaa ttacccttaa
     4141 cctacccagt ggtatgtctc ttagttgatt acgaacccaa tcaaattgac aaccaagatt
     4201 aactatcaca attccatttt gttggttagt gaataaattc aatgataaat tattttattg
     4261 tcacaataat atattaaagc tttcaagacc acttgtcaaa ctcaacggaa attttactgt
     4321 tacctttgga aatctgtaac ttgaatattt agaaaattct aaggatttaa acaatgaatt
     4381 aaccaccatc aaatggtgtt tgtctgtttg gcaggatctc accttggctg acctgcaact
     4441 ggctatgtag accaagtggc ttctaatcca aattactctg cctctaattg ttgggactaa
     4501 agatatatgc cgccacaccc agtctcttat taaagttttt gacaaagatt tatttagatt
     4561 atatagatgg ataaatttct ttaaaacagt gtaatttgtg tttctagcta atatgtatgt
     4621 aaggaaaatg cagagaaaag ctttgaatcc aagaattgtt ggaaactgct aagagttcta
     4681 tacctggacc aaagtgatga cagtaggaat gagtcgtaat gtagtgcttt ttcccttaaa
     4741 aaccacaaca aaaatctaat agcaacagta aaacaaaaac ctaggcacag tcactgtcct
     4801 tatagtacag actctactct caacctaaca gcttgcagaa gacaggcact gatgtcctcc
     4861 tgggccagtt ttgttaggag gactgagtag cagagctcca gagtccacag atgcagaccc
     4921 acagtccaga gtctgaagca ccactgtgcc cagatacttt ggaggaggga ctcttaacct
     4981 gtagcacttt tatcatacgg gtatcatatg ggtactttta acataatatc taaaaccaaa
     5041 aatgaagaca cagtctccaa tatagaggaa aatactaaag tgacttaatt atgcattgag
     5101 gtaatagtga tctccttttt tggtaaagct ggtaacttcc aatagtatca agcaaccatg
     5161 gaatagtttt gtggtggctt ggtttttgtt tgtatagtgc ctccaggtat tgaacccagt
     5221 attttgtgaa tagtatgcaa attaccctgc catcaagcca tatcctaggc acaaagtgtg
     5281 taaaaggagt gagagagaca gaagccttta cagaagaaac cagagcagca acagaaacgt
     5341 gttttaaaag aaaactgctg agtgcagatg attacatata gaggttgag
//
